From fffcb2bb25e5270fca04a9f55642320ebe1dae4e Mon Sep 17 00:00:00 2001 From: Talon Chandler Date: Thu, 13 Jun 2024 15:38:49 -0700 Subject: [PATCH 1/3] default HSV colormap --- recOrder/io/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/recOrder/io/utils.py b/recOrder/io/utils.py index 8ae2d8cc..6b379b72 100644 --- a/recOrder/io/utils.py +++ b/recOrder/io/utils.py @@ -133,7 +133,7 @@ def ret_ori_overlay( retardance, orientation, ret_max: Union[float, Literal["auto"]] = 10, - cmap: Literal["JCh", "HSV"] = "JCh", + cmap: Literal["JCh", "HSV"] = "HSV", ): """ This function will create an overlay of retardance and orientation with two different colormap options. From a088907c0dc48c07d6d5f4a8eb9688e9a631161f Mon Sep 17 00:00:00 2001 From: Talon Chandler Date: Thu, 11 Jul 2024 16:25:13 -0700 Subject: [PATCH 2/3] reinstate original fix --- recOrder/io/utils.py | 1 + recOrder/io/visualization.py | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/recOrder/io/utils.py b/recOrder/io/utils.py index 81165502..c29769cc 100644 --- a/recOrder/io/utils.py +++ b/recOrder/io/utils.py @@ -8,6 +8,7 @@ from iohub import open_ome_zarr + def add_index_to_path(path: Path): """Takes a path to a file or folder and appends the smallest index that does not already exist in that folder. diff --git a/recOrder/io/visualization.py b/recOrder/io/visualization.py index dc8ff510..524b131d 100644 --- a/recOrder/io/visualization.py +++ b/recOrder/io/visualization.py @@ -11,7 +11,7 @@ def ret_ori_overlay( czyx, ret_min: float = 1, ret_max: Union[float, Literal["auto"]] = 10, - cmap: Literal["JCh", "HSV"] = "JCh", + cmap: Literal["JCh", "HSV"] = "HSV", ): """ Creates an overlay of retardance and orientation with two different colormap options. From 84470ef1b31c9e61fb2aaec56e6c8ce35c38731b Mon Sep 17 00:00:00 2001 From: Ziwen Liu <67518483+ziw-liu@users.noreply.github.com> Date: Thu, 11 Jul 2024 16:43:55 -0700 Subject: [PATCH 3/3] remove experimental flag for pyqt6 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 43e4e255..a6cb7f5c 100644 --- a/setup.cfg +++ b/setup.cfg @@ -60,7 +60,7 @@ acq = pyqtgraph>=0.12.3 napari-ome-zarr>=0.3.2 # drag and drop convenience ome-zarr==0.8.3 # unpin when resolved: https://github.com/ome/napari-ome-zarr/issues/111 - napari[pyqt6_experimental] + napari[pyqt6] [options.package_data] * = *.yaml