Conesearch_tests.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "from astroquery.utils.tap.core import TapPlus"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Created TAP+ (v1.0.1) - Connection:\n",
      "\tHost: datalab.noao.edu\n",
      "\tUse HTTPS: False\n",
      "\tPort: 80\n",
      "\tSSL Port: 443\n"
     ]
    }
   ],
   "source": [
    "tap = TapPlus(url='http://datalab.noao.edu/tap')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Retrieving tables...\n",
      "Parsing tables...\n",
      "Done.\n"
     ]
    }
   ],
   "source": [
    "tbl = tap.load_tables()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "TAP Table name: ls_dr5.ls_dr5.bricks\n",
      "Description: Table with RA, DEC bounds of each geometrical brick on the sky\n",
      "Num. columns: 14\n"
     ]
    }
   ],
   "source": [
    "for t in tbl:\n",
    "    if t.get_name() == 'ls_dr5.bricks':\n",
    "        print(t)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Launched query: 'select  TOP 2000 * from ls_dr5.bricks as target where \n",
      "CONTAINS(POINT('ICRS', target.ra, target.dec), CIRCLE('ICRS', 0.3, -3.5, 1.))'\n",
      "Retrieving sync. results...\n"
     ]
    },
    {
     "ename": "ValueError",
     "evalue": "No table found",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mValueError\u001b[0m                                Traceback (most recent call last)",
      "\u001b[0;32m<ipython-input-17-f309939539cf>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mt\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mtap\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mlaunch_job\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0madql\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
      "\u001b[0;32m/usr/lib/python3.6/site-packages/astroquery/utils/tap/core.py\u001b[0m in \u001b[0;36mlaunch_job\u001b[0;34m(self, query, name, output_file, output_format, verbose, dump_to_file, upload_resource, upload_table_name)\u001b[0m\n\u001b[1;32m    229\u001b[0m                 \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m__connHandler\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdump_to_file\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0msuitableOutputFile\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mresponse\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    230\u001b[0m             \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 231\u001b[0;31m                 \u001b[0mresults\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mutils\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mread_http_response\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mresponse\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0moutput_format\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    232\u001b[0m                 \u001b[0mjob\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mset_results\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mresults\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    233\u001b[0m             \u001b[0mprint\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"Query finished.\"\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;32m/usr/lib/python3.6/site-packages/astroquery/utils/tap/xmlparser/utils.py\u001b[0m in \u001b[0;36mread_http_response\u001b[0;34m(response, outputFormat)\u001b[0m\n\u001b[1;32m     39\u001b[0m         \u001b[0;31m# If we want to use astropy.table, we have to read the data\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     40\u001b[0m         \u001b[0mdata\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mio\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mBytesIO\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mresponse\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mread\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 41\u001b[0;31m         \u001b[0;32mreturn\u001b[0m \u001b[0mAPTable\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mread\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdata\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mformat\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mastropyFormat\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m     42\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     43\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;32m/usr/lib64/python3.6/site-packages/astropy/table/table.py\u001b[0m in \u001b[0;36mread\u001b[0;34m(cls, *args, **kwargs)\u001b[0m\n\u001b[1;32m   2529\u001b[0m         \u001b[0mpassed\u001b[0m \u001b[0mthrough\u001b[0m \u001b[0mto\u001b[0m \u001b[0mthe\u001b[0m \u001b[0munderlying\u001b[0m \u001b[0mdata\u001b[0m \u001b[0mreader\u001b[0m \u001b[0;34m(\u001b[0m\u001b[0me\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mg\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0;31m \u001b[0m\u001b[0;31m`\u001b[0m\u001b[0;34m~\u001b[0m\u001b[0mastropy\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mio\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mascii\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mread\u001b[0m\u001b[0;31m`\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   2530\u001b[0m         \"\"\"\n\u001b[0;32m-> 2531\u001b[0;31m         \u001b[0mout\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mio_registry\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mread\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mcls\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0margs\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m   2532\u001b[0m         \u001b[0;31m# For some readers (e.g., ascii.ecsv), the returned `out` class is not\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   2533\u001b[0m         \u001b[0;31m# guaranteed to be the same as the desired output `cls`.  If so,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;32m/usr/lib64/python3.6/site-packages/astropy/io/registry.py\u001b[0m in \u001b[0;36mread\u001b[0;34m(cls, format, *args, **kwargs)\u001b[0m\n\u001b[1;32m    515\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    516\u001b[0m         \u001b[0mreader\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mget_reader\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mformat\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcls\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 517\u001b[0;31m         \u001b[0mdata\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mreader\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m*\u001b[0m\u001b[0margs\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    518\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    519\u001b[0m         \u001b[0;32mif\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0misinstance\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdata\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcls\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;32m/usr/lib64/python3.6/site-packages/astropy/io/votable/connect.py\u001b[0m in \u001b[0;36mread_table_votable\u001b[0;34m(input, table_id, use_names_over_ids)\u001b[0m\n\u001b[1;32m    106\u001b[0m             \u001b[0mtable\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mtables\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    107\u001b[0m         \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 108\u001b[0;31m             \u001b[0;32mraise\u001b[0m \u001b[0mValueError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"No table found\"\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    109\u001b[0m     \u001b[0;32melif\u001b[0m \u001b[0misinstance\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0minput\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mVOTable\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    110\u001b[0m         \u001b[0mtable\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0minput\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;31mValueError\u001b[0m: No table found"
     ]
    }
   ],
   "source": [
    "t = tap.launch_job(adql)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "t = tap.launch_job"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [],
   "source": [
    "adql = \"\"\"select * from ls_dr5.bricks as target where \n",
    "CONTAINS(POINT('ICRS', target.ra, target.dec), CIRCLE('ICRS', 0.3, -3.5, 1.))\"\"\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {},
   "outputs": [],
   "source": [
    "from astroquery.vo_conesearch import conesearch"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['SDSS DR7 - Sloan Digital Sky Survey Data Release 7 1',\n",
       " 'SDSS DR7 - Sloan Digital Sky Survey Data Release 7 2',\n",
       " 'SDSS DR7 - Sloan Digital Sky Survey Data Release 7 3',\n",
       " 'SDSS DR7 - Sloan Digital Sky Survey Data Release 7 4',\n",
       " 'SDSS DR8 - Sloan Digital Sky Survey Data Release 8 2',\n",
       " 'The HST Guide Star Catalog, Version 1.1 (Lasker+ 1992) 1',\n",
       " 'The HST Guide Star Catalog, Version 1.2 (Lasker+ 1996) 1',\n",
       " 'The HST Guide Star Catalog, Version GSC-ACT (Lasker+ 1996-99) 1',\n",
       " 'The PMM USNO-A1.0 Catalogue (Monet 1997) 1',\n",
       " 'The USNO-A2.0 Catalogue (Monet+ 1998) 1',\n",
       " 'Two Micron All Sky Survey (2MASS) 1',\n",
       " 'Two Micron All Sky Survey (2MASS) 2',\n",
       " 'USNO-A2 Catalogue 1']"
      ]
     },
     "execution_count": 31,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "conesearch.list_catalogs()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 35,
   "metadata": {},
   "outputs": [],
   "source": [
    "from astroquery.vo_conesearch.validator import conf as validator_conf"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 37,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Downloading http://vao.stsci.edu/directory/NVORegInt.asmx/VOTCapabilityPredOpt?predicate=1%3D1&capability=conesearch&VOTStyleOption=2 [Done]\n"
     ]
    }
   ],
   "source": [
    "import warnings\n",
    "from astroquery.vo_conesearch.validator import conf as validator_conf\n",
    "from astroquery.vo_conesearch.vos_catalog import VOSDatabase\n",
    "with warnings.catch_warnings():\n",
    "    warnings.simplefilter('ignore')\n",
    "    registry_db = VOSDatabase.from_registry(\n",
    "        validator_conf.conesearch_master_list, encoding='binary',\n",
    "        cache=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "19239"
      ]
     },
     "execution_count": 38,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(registry_db)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 45,
   "metadata": {},
   "outputs": [],
   "source": [
    "catalogs = registry_db.list_catalogs()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 64,
   "metadata": {},
   "outputs": [],
   "source": [
    "xvoc = registry_db.get_catalog('VVV Survey Band Merged JHKs 1')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 63,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 66,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "SkyMapper Survey metal-poor star spectroscopy (Jacobson+, 2015) 1\n",
      "redMaPPer. I. Algorithm applied to SDSS DR8 (Rykoff+, 2014) 1\n",
      "redMaPPer. I. Algorithm applied to SDSS DR8 (Rykoff+, 2014) 2\n"
     ]
    }
   ],
   "source": [
    "for s in catalogs:\n",
    "    if 'mapper' in s.lower():\n",
    "        print(s)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 50,
   "metadata": {},
   "outputs": [],
   "source": [
    "from astropy import coordinates as coord\n",
    "from astropy import units as u\n",
    "from astroquery.vo_conesearch import vos_catalog"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 57,
   "metadata": {},
   "outputs": [
    {
     "ename": "VOSError",
     "evalue": "None of the available catalogs returned valid results.",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mVOSError\u001b[0m                                  Traceback (most recent call last)",
      "\u001b[0;32m<ipython-input-57-1334ca264cc8>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m      7\u001b[0m         \u001b[0mkwargs\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;34m{\u001b[0m\u001b[0;34m'RA'\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mra\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdegree\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'DEC'\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdec\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdegree\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'SR'\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0msr\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvalue\u001b[0m\u001b[0;34m}\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m      8\u001b[0m         \u001b[0mcatalog_db\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mregistry_db\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mget_catalog\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'Properties of metal-poor stars in APOGEE DR13 (Hayes+, 2018) 1'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 9\u001b[0;31m         verbose=False)\n\u001b[0m",
      "\u001b[0;32m/usr/lib/python3.6/site-packages/astroquery/vo_conesearch/vos_catalog.py\u001b[0m in \u001b[0;36mcall_vo_service\u001b[0;34m(service_type, catalog_db, pedantic, verbose, cache, kwargs)\u001b[0m\n\u001b[1;32m    907\u001b[0m     \u001b[0;32mif\u001b[0m \u001b[0mn_timed_out\u001b[0m \u001b[0;34m>\u001b[0m \u001b[0;36m0\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    908\u001b[0m         \u001b[0merr_msg\u001b[0m \u001b[0;34m+=\u001b[0m \u001b[0;34m' ({0} URL(s) timed out.)'\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mformat\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mn_timed_out\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 909\u001b[0;31m     \u001b[0;32mraise\u001b[0m \u001b[0mVOSError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0merr_msg\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    910\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    911\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;31mVOSError\u001b[0m: None of the available catalogs returned valid results."
     ]
    }
   ],
   "source": [
    "c = coord.SkyCoord.from_name('47 Tuc')\n",
    "sr = 0.5 * u.degree\n",
    "with warnings.catch_warnings():\n",
    "    warnings.simplefilter('ignore')\n",
    "    result = vos_catalog.call_vo_service(\n",
    "        'conesearch_good',\n",
    "        kwargs={'RA': c.ra.degree, 'DEC': c.dec.degree, 'SR': sr.value},\n",
    "        catalog_db=registry_db.get_catalog('Properties of metal-poor stars in APOGEE DR13 (Hayes+, 2018) 1'),\n",
    "        verbose=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 55,
   "metadata": {},
   "outputs": [],
   "source": [
    "vos_catalog.call_vo_service?"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 59,
   "metadata": {},
   "outputs": [],
   "source": [
    "registry_db.to_json('vo_registry.db.json')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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