Reconstruction of outlier filtered particles

[Cookiemaster33]

Hi there.

I was able to run dragon-ai very successfully for ab-initio reconstructions.

I ran through the Jupyter notebook pipeline and produced a .pkl file to sort for outlier and non-outlier particles.

I am trying to use cryoDGRN to reconstruct a volume from the respective .pkl files, but was not able to make it work.

Any recommendations?

Best

Toby

(P.s.: FYI. I realized that the Jupyter notebook script contains some errors. For most of the "config commands" it should be e.g. "config['training']['use_gt_poses']" instead of "config['use_gt_poses']"