separate out the genomic table from other transmission parameters

rds ignoring

ignore rds files

add genomic data analysis task; add data curation script (funcs moved…

remove from delays orderly task

switch surname no longer needed as root cause fixed

Merge pull request #59 from mrc-ide/db_extraction_prep

add tables for miscarriage rates, realtive contributions, fix bugs

add separate task to prepare data for plotting

comment out breaking meta analysis code

fix conflicts in db_double

merge main with zika and fixed conflicts in db_compilation

add prep data and risk factors tasks

commit unimportant changes

remove old zika_compilation task

remove zika specific part of db_compilation

add new tasks to workflow; move filtering of covids to overall functi…

add task for reproduction numbers

add new sample sizes

Merges filter_qa & filter_extracted + notes check

Deploying to gh-pages from @ 8e2bbaa 🚀

Adds code to deal with multi-form extractions

Merge pull request #59 from mrc-ide/db_extraction_prep

Adds code to deal with multi-form extractions

Adds api_token_env_var option to download config

Updates UUID generation to use id::random_id

Adds Nipah db_redcap_download config

Alphabetically order libraries

Make validation.R a shared resource.