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niconverter

This library allows converting raw multispot (96-ch) data files to Photon-HDF5 files. The input data files contains photon timestamps and detectors in a binary format saved by a multichannel LabVIEW-FPGA timestamping code.

The data processing is done in chunks so that arbitrary large data files can be converted with constant RAM usage.

For more info see the niconverter module's docstring.

Installation

To install, download the repository, enter the source folder and type:

pip install .

Cite

If you use this code, please cite the paper:

48-spot single-molecule FRET setup with periodic acceptor excitation
A. Ingargiola, M. Segal, A. Gulinatti, I. Rech, I. Labanca, P. Maccagnani, M. Ghioni, S. Weiss, X. Michalet
bioRxiv 156182; 2017. doi: https://doi.org/10.1101/156182


Copyright (C) 2017 The Regents of the University of California, Antonino Ingargiola and contributors.

This work was supported by NIH grants R01 GM069709 and R01 GM095904.