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r4sOrig.res
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#Rates were calculated using the expectation of the posterior rate distribution
#Prior distribution is Gamma with 16 discrete categories
#SEQ: the amino acid in the reference sequence in one letter code.
#SCORE: The conservation scores. lower value = higher conservation.
#QQ-INTERVAL: the confidence interval for the rate estimates. The default interval is 25-75 percentiles
#STD: the standard deviation of the posterior rate distribution.
#MSA DATA: The number of aligned sequences having an amino acid (non-gapped) from the overall number of sequences at each position.
#POS SEQ SCORE QQ-INTERVAL STD MSA DATA
#The alpha parameter 2.03631
1 N 0.8666 [0.4426,1.1238] 0.6207 3/55
2 T 1.0022 [0.7011,1.2654] 0.3921 15/55
3 I 1.2771 [1.0015,1.4365] 0.3382 49/55
4 G 0.4210 [0.3550,0.5276] 0.1359 49/55
5 N 0.1518 [0.1333,0.1333] 0.0513 49/55
6 E 1.6810 [1.4365,1.9880] 0.3973 49/55
7 F 1.2845 [1.0015,1.4365] 0.3243 50/55
8 G 0.1755 [0.1333,0.1333] 0.0844 50/55
9 N 1.1675 [1.0015,1.2654] 0.2861 50/55
10 L 1.4471 [1.2654,1.6585] 0.3654 50/55
11 T 1.7257 [1.4365,1.9880] 0.4686 50/55
12 E 0.6215 [0.4426,0.7011] 0.2033 50/55
13 R 0.9111 [0.7011,1.0015] 0.2379 50/55
14 T 1.2633 [1.0015,1.4365] 0.3216 51/55
15 D 1.6288 [1.4365,1.9880] 0.4144 51/55
16 N 1.2045 [1.0015,1.4365] 0.2850 51/55
17 S 1.0837 [0.8930,1.2654] 0.2785 51/55
18 L 1.1025 [0.8930,1.2654] 0.3077 51/55
19 N 0.7511 [0.6130,0.8930] 0.2111 51/55
20 V 1.3082 [1.1238,1.4365] 0.3052 54/55
21 L 2.4326 [1.9880,2.8078] 0.4901 54/55
22 I 0.6453 [0.5276,0.7936] 0.1901 54/55
23 S 1.3064 [1.1238,1.4365] 0.2990 54/55
24 S 2.5661 [1.9880,2.8078] 0.4120 54/55
25 I 0.6977 [0.5276,0.7936] 0.1931 54/55
26 E 0.7810 [0.6130,0.8930] 0.2020 54/55
27 M 0.6952 [0.5276,0.7936] 0.2017 54/55
28 E 0.8953 [0.7011,1.0015] 0.2258 54/55
29 E 1.1086 [0.8930,1.2654] 0.2780 55/55
30 G 0.2683 [0.1333,0.3550] 0.1397 55/55
31 A 0.7120 [0.6130,0.7936] 0.1811 55/55
32 L 0.3412 [0.2595,0.4426] 0.1320 55/55
33 F 1.3612 [1.1238,1.6585] 0.3204 55/55
34 V 0.6915 [0.5276,0.7936] 0.2042 55/55
35 P 0.2491 [0.1333,0.3550] 0.1283 55/55
36 H 0.7277 [0.6130,0.8930] 0.1899 55/55
37 Y 1.2964 [1.0015,1.4365] 0.3411 55/55
38 Y 0.2741 [0.1333,0.3550] 0.1130 55/55
39 S 0.4088 [0.3550,0.5276] 0.1326 55/55
40 K 1.1649 [1.0015,1.2654] 0.2806 55/55
41 A 0.3379 [0.2595,0.4426] 0.1236 55/55
42 I 1.0074 [0.7936,1.1238] 0.2508 55/55
43 V 0.7431 [0.6130,0.8930] 0.2287 55/55
44 I 0.5016 [0.3550,0.6130] 0.1557 55/55
45 L 1.0682 [0.8930,1.2654] 0.2747 55/55
46 V 1.2832 [1.0015,1.4365] 0.3169 55/55
47 V 0.2272 [0.1333,0.2595] 0.1033 55/55
48 N 1.6256 [1.4365,1.9880] 0.3691 55/55
49 E 1.5464 [1.2654,1.6585] 0.3581 55/55
50 G 0.2103 [0.1333,0.2595] 0.1115 55/55
51 E 2.3428 [1.9880,2.8078] 0.5085 55/55
52 A 0.3879 [0.2595,0.4426] 0.1630 55/55
53 H 2.6303 [2.8078,2.8078] 0.3664 54/55
54 V 1.3581 [1.1238,1.6585] 0.3411 54/55
55 E 0.4127 [0.2595,0.5276] 0.1491 54/55
56 L 0.6960 [0.5276,0.7936] 0.1922 54/55
57 V 0.4913 [0.3550,0.6130] 0.1538 53/55
58 G 1.1092 [0.8930,1.2654] 0.3087 53/55
59 P 0.6988 [0.5276,0.7936] 0.2149 52/55
60 K 0.6364 [0.5276,0.7936] 0.1868 50/55
61 G 1.8941 [1.6585,1.9880] 0.4797 48/55
62 N 1.2423 [1.0015,1.4365] 0.3218 46/55
63 K 1.2303 [1.0015,1.4365] 0.3298 42/55
64 E 0.9071 [0.7011,1.1238] 0.2624 40/55
65 T 1.6661 [1.2654,1.9880] 0.5126 39/55
66 L 2.7075 [2.8078,2.8078] 0.2881 38/55
67 E 1.5159 [1.2654,1.6585] 0.4464 37/55
68 Y 2.1606 [1.6585,2.8078] 0.5839 34/55
69 E 1.6698 [1.2654,1.9880] 0.4742 34/55
70 S 1.4462 [1.1238,1.6585] 0.4268 32/55
71 Y 1.9575 [1.4365,2.8078] 0.5906 31/55
72 R 0.8550 [0.6130,1.0015] 0.2869 30/55
73 A 0.6960 [0.5276,0.7936] 0.2433 29/55
74 E 1.9421 [1.4365,1.9880] 0.5676 29/55
75 L 1.1235 [0.7936,1.4365] 0.4181 26/55
76 S 0.5791 [0.4426,0.7011] 0.2231 26/55
77 K 1.0364 [0.7936,1.2654] 0.4010 18/55
78 D 0.5019 [0.2595,0.6130] 0.2782 8/55
#Average = 1.0788
#Standard Deviation = 0.6127