From 7558dfbbd4fd891f9b99abe03ab231c096702177 Mon Sep 17 00:00:00 2001
From: Mark Bicknell <mark.bicknell@nanoporetech.com>
Date: Mon, 18 Nov 2024 12:45:18 +0000
Subject: [PATCH] Merge branch 'htslib-without-libdeflate' into 'master'

build htslib without libdeflate

See merge request machine-learning/dorado!1246

(cherry picked from commit adb5e116c94399804e1d8614b19d8b3fe7ebe19c)

7797747d build htslib with libdeflate

Co-authored-by: Ben Lawrence <ben.lawrence@nanoporetech.com>
---
 cmake/Htslib.cmake | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/cmake/Htslib.cmake b/cmake/Htslib.cmake
index caabc1a39..9260ac2d4 100644
--- a/cmake/Htslib.cmake
+++ b/cmake/Htslib.cmake
@@ -45,7 +45,7 @@ if(NOT TARGET htslib) # lazy include guard
                 BUILD_IN_SOURCE 1
                 CONFIGURE_COMMAND ${AUTOHEADER_COMMAND}
                 COMMAND ${AUTOCONF_COMMAND}
-                COMMAND ./configure --disable-bz2 --disable-lzma --disable-libcurl --disable-s3 --disable-gcs ${CONFIGURE_FLAGS}
+                COMMAND ./configure --disable-bz2 --disable-lzma --disable-libcurl --disable-s3 --disable-gcs --without-libdeflate ${CONFIGURE_FLAGS}
                 BUILD_COMMAND ${MAKE_COMMAND} install prefix=${htslib_PREFIX}
                 COMMAND ${INSTALL_NAME}
                 INSTALL_COMMAND ""