diff --git a/CHANGELOG.md b/CHANGELOG.md
index 89828a429..fcf3dfeef 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,6 +2,19 @@
 
 All notable changes to Dorado will be documented in this file.
 
+# [0.6.1] (23 April 2024)
+
+This release of Dorado fixes bugs in `dorado aligner` related to using presets incorrectly and in `dorado demux` which were causing demultiplexed outputs to be malformed.
+
+* 3e060db5a35ab09fecbeef9754cc545ba400edf1 - Skip stripping of SQ header lines in dorado demux --no-classify
+* a2abf83852e895b1016c690769b59c06587684fe - Fix incorrect overriding of minimap2 options when minimap2 preset is specified
+* 1cc207a166b1cafcbd012f5c70b5c817c788c7f3 - Fix bug causing unclassified records from `dorado demux` to be unreadable by samtools
+* 298277150ad2522ca6c1928c4981782ce2893a5a - Fix issue with allocating memory on unused GPU during basecalling
+* fa79f4a77fca737704d8a9e08d0495b9988f88ef - Fix reverse strand alignments when re-mapping a SAM/BAM file with `dorado aligner`
+* 3b2c8252d1a40bb0f941ca2ceca0849be15d15fa - Propagate `sv` tag to split reads
+* 11675a565da9af52de89a3f6614d15e57d10765d - Fix bug where errors were being swallowed in HtsFile class
+* 73046e19fd443dfb48f3fbb82c0b37c5c7cfb8d5 - Fx typo in Warnings.cmake
+
 # [0.6.0] (2 April 2024)
 
 This release of Dorado improves performance for short read basecalling and RBK barcode classification rates, introduces sorted and indexed BAM generation in Dorado aligner and demux, and updates the minimap2 version and default mapping preset. It also adds GPU information to the output BAM or FASTQ and includes several other improvements and bug fixes.
diff --git a/README.md b/README.md
index 6dee444e7..fc6cbf627 100644
--- a/README.md
+++ b/README.md
@@ -19,10 +19,10 @@ If you encounter any problems building or running Dorado, please [report an issu
 
 ## Installation
 
- - [dorado-0.6.0-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.0-linux-x64.tar.gz)
- - [dorado-0.6.0-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.0-linux-arm64.tar.gz)
- - [dorado-0.6.0-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.0-osx-arm64.zip)
- - [dorado-0.6.0-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.0-win64.zip)
+ - [dorado-0.6.1-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.1-linux-x64.tar.gz)
+ - [dorado-0.6.1-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.1-linux-arm64.tar.gz)
+ - [dorado-0.6.1-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.1-osx-arm64.zip)
+ - [dorado-0.6.1-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.1-win64.zip)
 
 ## Platforms
 
diff --git a/cmake/DoradoVersion.cmake b/cmake/DoradoVersion.cmake
index 92a8c9685..919d8a120 100644
--- a/cmake/DoradoVersion.cmake
+++ b/cmake/DoradoVersion.cmake
@@ -1,6 +1,6 @@
 set(DORADO_VERSION_MAJOR 0)
 set(DORADO_VERSION_MINOR 6)
-set(DORADO_VERSION_REV 0)
+set(DORADO_VERSION_REV 1)
 
 find_package(Git QUIET)
 if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")