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Copy pathva-noro.9.vadr.sgm
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va-noro.9.vadr.sgm
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# seq seq ftr ftr ftr num sgm seq seq mdl mdl sgm 5' 3' 5' 3'
#idx name len p/f model type name idx sgm idx from to from to len str trc pp pp gap gap
#----- ---------- ---- ---- --------- ----------- ------------------------- --- --- --- ---- ---- ---- ---- ---- --- ----- ----- ----- --- ---
1.1.1 KY887602.1 7547 PASS NC_039477 gene ORF1 1 1 1 1 5083 22 5104 5083 + 5' - 0.975 yes no
1.2.1 KY887602.1 7547 PASS NC_039477 CDS nonstructural_polyprotein 2 1 1 1 5083 22 5104 5083 + 5' - 0.975 yes no
1.3.1 KY887602.1 7547 PASS NC_039477 gene ORF2 3 1 1 5064 6686 5085 6707 1623 + no 0.975 0.975 no no
1.4.1 KY887602.1 7547 PASS NC_039477 CDS VP1 4 1 1 5064 6686 5085 6707 1623 + no 0.975 0.975 no no
1.5.1 KY887602.1 7547 PASS NC_039477 gene ORF3 5 1 1 6686 7492 6707 7513 807 + no 0.975 0.975 no no
1.6.1 KY887602.1 7547 PASS NC_039477 CDS VP2 6 1 1 6686 7492 6707 7513 807 + no 0.975 0.975 no no
1.7.1 KY887602.1 7547 PASS NC_039477 mat_peptide p48 7 1 1 1 979 22 1000 979 + 5' - 0.975 yes no
1.8.1 KY887602.1 7547 PASS NC_039477 mat_peptide NTPase 8 1 1 980 2077 1001 2098 1098 + no 0.975 0.975 no no
1.9.1 KY887602.1 7547 PASS NC_039477 mat_peptide p22 9 1 1 2078 2608 2099 2629 531 + no 0.975 0.975 no no
1.10.1 KY887602.1 7547 PASS NC_039477 mat_peptide VPg 10 1 1 2609 3007 2630 3028 399 + no 0.975 0.975 no no
1.11.1 KY887602.1 7547 PASS NC_039477 mat_peptide Pro 11 1 1 3008 3550 3029 3571 543 + no 0.975 0.975 no no
1.12.1 KY887602.1 7547 PASS NC_039477 mat_peptide RdRp 12 1 1 3551 5080 3572 5101 1530 + no 0.975 0.975 no no
#
2.1.1 KT818729.1 243 PASS NC_044854 gene ORF1 1 1 1 1 243 4625 4867 243 + 5'&3' - - yes yes
2.2.1 KT818729.1 243 PASS NC_044854 CDS nonstructural_polyprotein 2 1 1 1 243 4625 4867 243 + 5'&3' - - yes yes
2.3.1 KT818729.1 243 PASS NC_044854 mat_peptide RdRp 12 1 1 1 243 4625 4867 243 + 5'&3' - - yes yes
#
3.1.1 EU437710.1 291 PASS NC_001959 gene ORF1 1 1 1 1 13 5362 5374 13 + 5' - 0.975 yes no
3.2.1 EU437710.1 291 PASS NC_001959 CDS nonstructural_polyprotein 2 1 1 1 13 5362 5374 13 + 5' - 0.975 yes no
3.3.1 EU437710.1 291 PASS NC_001959 gene ORF2 3 1 1 1 291 5362 5652 291 + 5'&3' - - yes yes
3.4.1 EU437710.1 291 PASS NC_001959 CDS VP1 4 1 1 1 291 5362 5652 291 + 5'&3' - - yes yes
3.5.1 EU437710.1 291 PASS NC_001959 mat_peptide RdRp 12 1 1 1 10 5362 5371 10 + 5' - 0.975 yes no
#
4.1.1 DQ288307.1 1094 PASS NC_029645 gene ORF1 1 1 1 1 210 4867 5076 210 + 5' - 0.975 yes no
4.2.1 DQ288307.1 1094 PASS NC_029645 CDS nonstructural_polyprotein 2 1 1 1 210 4867 5076 210 + 5' - 0.975 yes no
4.3.1 DQ288307.1 1094 PASS NC_029645 gene ORF2 3 1 1 197 1094 5063 5960 898 + 3' 0.975 - no yes
4.4.1 DQ288307.1 1094 PASS NC_029645 CDS VP1 4 1 1 197 1094 5063 5960 898 + 3' 0.975 - no yes
4.5.1 DQ288307.1 1094 PASS NC_029645 mat_peptide RdRp 12 1 1 1 207 4867 5073 207 + 5' - 0.975 yes no
#
5.1.1 AY237464.1 255 PASS NC_039477 gene ORF2 3 1 1 1 255 5112 5366 255 + 5'&3' - - yes yes
5.2.1 AY237464.1 255 PASS NC_039477 CDS VP1 4 1 1 1 255 5112 5366 255 + 5'&3' - - yes yes
#
6.1.1 KF475958.1 275 PASS NC_044854 gene ORF2 3 1 1 1 275 5379 5653 275 + 5'&3' - - yes yes
6.2.1 KF475958.1 275 PASS NC_044854 CDS VP1 4 1 1 1 275 5379 5653 275 + 5'&3' - - yes yes
#
7.1.1 AB713840.1 347 PASS NC_008311 gene ORF1 1 1 1 1 14 5056 5069 14 + 5' - 0.975 yes no
7.2.1 AB713840.1 347 PASS NC_008311 CDS nonstructural_polyprotein 2 1 1 1 14 5056 5069 14 + 5' - 0.975 yes no
7.3.1 AB713840.1 347 PASS NC_008311 gene ORF2 3 1 1 1 347 5056 5402 347 + 3' 0.975 - no yes
7.4.1 AB713840.1 347 PASS NC_008311 CDS VP1 4 1 1 1 347 5056 5402 347 + 3' 0.975 - no yes
7.5.1 AB713840.1 347 PASS NC_008311 gene ORF4 5 1 1 14 347 5069 5402 334 + 3' 0.975 - no yes
7.6.1 AB713840.1 347 PASS NC_008311 CDS VF1 6 1 1 14 347 5069 5402 334 + 3' 0.975 - no yes
7.7.1 AB713840.1 347 PASS NC_008311 mat_peptide RdRp 14 1 1 1 11 5056 5066 11 + 5' - 0.975 yes no
#
8.1.1 JN585032.1 286 PASS NC_029645 gene ORF1 1 1 1 1 286 4722 5007 286 + 5'&3' - - yes yes
8.2.1 JN585032.1 286 PASS NC_029645 CDS nonstructural_polyprotein 2 1 1 1 286 4722 5007 286 + 5'&3' - - yes yes
8.3.1 JN585032.1 286 PASS NC_029645 mat_peptide RdRp 12 1 1 1 286 4722 5007 286 + 5'&3' - - yes yes
#
9.1.1 JN975492.1 7286 FAIL NC_008311 gene ORF1 1 1 1 1 5044 23 5069 5044 + 5' - 0.975 yes no
9.2.1 JN975492.1 7286 FAIL NC_008311 CDS nonstructural_polyprotein 2 1 1 1 5044 23 5069 5044 + 5' - 0.975 yes no
9.3.1 JN975492.1 7286 FAIL NC_008311 gene ORF2 3 1 1 5031 6656 5056 6681 1626 + no 0.975 0.975 no no
9.4.1 JN975492.1 7286 FAIL NC_008311 CDS VP1 4 1 1 5031 6656 5056 6681 1626 + no 0.975 0.975 no no
9.5.1 JN975492.1 7286 FAIL NC_008311 gene ORF4 5 1 1 5044 5685 5069 5710 642 + no 0.975 0.975 no no
9.6.1 JN975492.1 7286 FAIL NC_008311 CDS VF1 6 1 1 5044 5685 5069 5710 642 + no 0.975 0.975 no no
9.7.1 JN975492.1 7286 FAIL NC_008311 gene ORF3 7 1 1 6656 7282 6681 7307 627 + no 0.975 0.975 no no
9.8.1 JN975492.1 7286 FAIL NC_008311 CDS VP2 8 1 1 6656 7282 6681 7307 627 + no 0.975 0.975 no no
9.9.1 JN975492.1 7286 FAIL NC_008311 mat_peptide p48 9 1 1 1 1000 23 1028 1000 + 5' - 0.9 yes no
9.10.1 JN975492.1 7286 FAIL NC_008311 mat_peptide NTPase 10 1 1 1001 2092 1029 2120 1092 + no 0.9 0.975 no no
9.11.1 JN975492.1 7286 FAIL NC_008311 mat_peptide p22 11 1 1 2093 2590 2121 2615 498 + no 0.975 0.975 no no
9.12.1 JN975492.1 7286 FAIL NC_008311 mat_peptide VPg 12 1 1 2591 2965 2616 2987 375 + no 0.975 0.975 no no
9.13.1 JN975492.1 7286 FAIL NC_008311 mat_peptide Pro 13 1 1 2966 3514 2988 3536 549 + no 0.975 0.975 no no
9.14.1 JN975492.1 7286 FAIL NC_008311 mat_peptide RdRp 14 1 1 3515 5041 3537 5066 1527 + no 0.975 0.975 no no