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ArchR project input #67

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mjleone opened this issue Oct 18, 2024 · 1 comment
Open

ArchR project input #67

mjleone opened this issue Oct 18, 2024 · 1 comment

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@mjleone
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mjleone commented Oct 18, 2024

Hello, I am trying differential accessibility with an ArchR project:

DE = run_de(archr_obj, input_type='scATAC',replicate_col="Sample", 
            cell_type_col="cell_type",label_col="label")

Error in check_inputs(input = input, meta = meta, replicate_col = replicate_col, : input must be Seurat, monocle, sparse matrix, numeric matrix, or numeric data frame

@WangRong423
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hi @mjleone ,I have the same issues as you. Do you have any solutions?

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