From 0ea316e94661b472b7e615e8d0233a3690ed6f5a Mon Sep 17 00:00:00 2001
From: Annick Renevey <47788523+rannick@users.noreply.github.com>
Date: Thu, 19 Dec 2024 11:57:02 +0100
Subject: [PATCH] add minimap

---
 modules/local/starfusion/build/environment.yml    | 1 +
 modules/local/starfusion/build/main.nf            | 2 +-
 modules/local/starfusion/detect/environment.yml   | 1 +
 modules/local/starfusion/download/environment.yml | 1 +
 4 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/modules/local/starfusion/build/environment.yml b/modules/local/starfusion/build/environment.yml
index 18b2407b..ef7f9316 100644
--- a/modules/local/starfusion/build/environment.yml
+++ b/modules/local/starfusion/build/environment.yml
@@ -4,4 +4,5 @@ channels:
 dependencies:
   - bioconda::dfam=3.7
   - bioconda::hmmer=3.4
+  - bioconda::minimap2=2.28
   - bioconda::star-fusion=1.14.0
diff --git a/modules/local/starfusion/build/main.nf b/modules/local/starfusion/build/main.nf
index e106bf80..ad35b067 100644
--- a/modules/local/starfusion/build/main.nf
+++ b/modules/local/starfusion/build/main.nf
@@ -3,7 +3,7 @@ process STARFUSION_BUILD {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f7/f7977acd75883433483258a1cc21d069a64947af431b26c3fc13c6be62666dfa/data' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/be/bed86145102fdf7e381e1a506a4723676f98b4bbe1db5085d02213cef18525c9/data' :
         'community.wave.seqera.io/library/dfam_hmmer_star-fusion:e8fe96707386872f'}"
 
     input:
diff --git a/modules/local/starfusion/detect/environment.yml b/modules/local/starfusion/detect/environment.yml
index 18b2407b..ef7f9316 100644
--- a/modules/local/starfusion/detect/environment.yml
+++ b/modules/local/starfusion/detect/environment.yml
@@ -4,4 +4,5 @@ channels:
 dependencies:
   - bioconda::dfam=3.7
   - bioconda::hmmer=3.4
+  - bioconda::minimap2=2.28
   - bioconda::star-fusion=1.14.0
diff --git a/modules/local/starfusion/download/environment.yml b/modules/local/starfusion/download/environment.yml
index 18b2407b..ef7f9316 100644
--- a/modules/local/starfusion/download/environment.yml
+++ b/modules/local/starfusion/download/environment.yml
@@ -4,4 +4,5 @@ channels:
 dependencies:
   - bioconda::dfam=3.7
   - bioconda::hmmer=3.4
+  - bioconda::minimap2=2.28
   - bioconda::star-fusion=1.14.0