From 2e928ed27519168d7ee851a9e593496031d5e104 Mon Sep 17 00:00:00 2001
From: Annick Renevey <47788523+rannick@users.noreply.github.com>
Date: Tue, 10 Dec 2024 14:59:16 +0100
Subject: [PATCH] update test

---
 modules/local/fusionreport/detect/tests/main.nf.test      | 5 ++---
 modules/local/fusionreport/detect/tests/main.nf.test.snap | 6 +++---
 modules/local/fusionreport/download/tests/main.nf.test    | 8 ++++----
 .../local/fusionreport/download/tests/main.nf.test.snap   | 8 ++++----
 4 files changed, 13 insertions(+), 14 deletions(-)

diff --git a/modules/local/fusionreport/detect/tests/main.nf.test b/modules/local/fusionreport/detect/tests/main.nf.test
index bd5ab356..9fc89540 100644
--- a/modules/local/fusionreport/detect/tests/main.nf.test
+++ b/modules/local/fusionreport/detect/tests/main.nf.test
@@ -33,8 +33,7 @@ nextflow_process {
                     file("https://github.com/Clinical-Genomics/fusion-report/raw/master/tests/test_data/fusioncatcher.txt")
                 ]
 
-                input[1] = FUSIONREPORT_DOWNLOAD.out.fusionreport_db
-
+                input[1] = FUSIONREPORT_DOWNLOAD.out.fusionreport_ref
                 input[2] = 1
                 """
             }
@@ -91,7 +90,7 @@ nextflow_process {
                     file("https://github.com/Clinical-Genomics/fusion-report/raw/master/tests/test_data/fusioncatcher.txt")
                 ]
 
-                input[1] = FUSIONREPORT_DOWNLOAD.out.fusionreport_db
+                input[1] = FUSIONREPORT_DOWNLOAD.out.fusionreport_ref
 
                 input[2] = 1
                 """
diff --git a/modules/local/fusionreport/detect/tests/main.nf.test.snap b/modules/local/fusionreport/detect/tests/main.nf.test.snap
index fb37037f..21d16b61 100644
--- a/modules/local/fusionreport/detect/tests/main.nf.test.snap
+++ b/modules/local/fusionreport/detect/tests/main.nf.test.snap
@@ -68,7 +68,7 @@
         "content": [
             {
                 "0": [
-                    "versions.yml:md5,6bd28f2526774f519a7627a30c6a7f2f"
+                    "versions.yml:md5,8cabeb934dbeb51399427d83c57bf1b4"
                 ],
                 "1": [
                     [
@@ -173,7 +173,7 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,6bd28f2526774f519a7627a30c6a7f2f"
+                    "versions.yml:md5,8cabeb934dbeb51399427d83c57bf1b4"
                 ]
             }
         ],
@@ -181,6 +181,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.10.2"
         },
-        "timestamp": "2024-12-06T13:12:32.981394201"
+        "timestamp": "2024-12-10T14:55:14.475834"
     }
 }
\ No newline at end of file
diff --git a/modules/local/fusionreport/download/tests/main.nf.test b/modules/local/fusionreport/download/tests/main.nf.test
index dd079587..35af2a52 100644
--- a/modules/local/fusionreport/download/tests/main.nf.test
+++ b/modules/local/fusionreport/download/tests/main.nf.test
@@ -19,10 +19,10 @@ nextflow_process {
             assertAll(
                 { assert process.success },
                 { assert snapshot(
-                    path(process.out.fusionreport_db[0][1]).resolve("fusiongdb2.db"),
-                    path(process.out.fusionreport_db[0][1]).resolve("mitelman.db"),
-                    path(process.out.fusionreport_db[0][1]).resolve("DB-timestamp.txt").exists(),
-                    path(process.out.fusionreport_db[0][1]).resolve("fusion_report.log").exists(),
+                    path(process.out.fusionreport_ref[0][1]).resolve("fusiongdb2.db"),
+                    path(process.out.fusionreport_ref[0][1]).resolve("mitelman.db"),
+                    path(process.out.fusionreport_ref[0][1]).resolve("DB-timestamp.txt").exists(),
+                    path(process.out.fusionreport_ref[0][1]).resolve("fusion_report.log").exists(),
                     process.out.versions
                     ).match() }
             )
diff --git a/modules/local/fusionreport/download/tests/main.nf.test.snap b/modules/local/fusionreport/download/tests/main.nf.test.snap
index c328f748..79778806 100644
--- a/modules/local/fusionreport/download/tests/main.nf.test.snap
+++ b/modules/local/fusionreport/download/tests/main.nf.test.snap
@@ -21,7 +21,7 @@
                 "0": [
                     [
                         {
-                            "id": "fusionreport_dbs"
+                            "id": "fusion_report_db"
                         },
                         [
                             "DB-timestamp.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
@@ -35,10 +35,10 @@
                 "1": [
                     "versions.yml:md5,fa5f13c563f431912048c1802b5a0c74"
                 ],
-                "fusionreport_db": [
+                "fusion_report_db": [
                     [
                         {
-                            "id": "fusionreport_dbs"
+                            "id": "fusion_report_db"
                         },
                         [
                             "DB-timestamp.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
@@ -60,4 +60,4 @@
         },
         "timestamp": "2024-12-05T19:35:49.629287874"
     }
-}
\ No newline at end of file
+}