From 474a89e9fec57aecacab55f1ee204f24dfd91389 Mon Sep 17 00:00:00 2001
From: nschcolnicov <nico.schcolnicov@gmail.com>
Date: Tue, 3 Dec 2024 20:05:24 +0000
Subject: [PATCH] add missing conda lines

---
 modules/local/fusioninspector/main.nf     | 1 +
 modules/local/starfusion/build/main.nf    | 1 +
 modules/local/starfusion/detect/main.nf   | 1 +
 modules/local/starfusion/download/main.nf | 1 +
 4 files changed, 4 insertions(+)

diff --git a/modules/local/fusioninspector/main.nf b/modules/local/fusioninspector/main.nf
index 59d513fb..ae05ceb4 100644
--- a/modules/local/fusioninspector/main.nf
+++ b/modules/local/fusioninspector/main.nf
@@ -2,6 +2,7 @@ process FUSIONINSPECTOR {
     tag "$meta.id"
     label 'process_high'
 
+    conda "${moduleDir}/environment.yml"
     container 'community.wave.seqera.io/library/dfam_hmmer_samtools_star-fusion_pruned:5694d82381bf039e'
 
     input:
diff --git a/modules/local/starfusion/build/main.nf b/modules/local/starfusion/build/main.nf
index cedf8c46..6ac3c694 100644
--- a/modules/local/starfusion/build/main.nf
+++ b/modules/local/starfusion/build/main.nf
@@ -1,6 +1,7 @@
 process STARFUSION_BUILD {
     tag 'star-fusion'
 
+    conda "${moduleDir}/environment.yml"
     container 'community.wave.seqera.io/library/dfam_hmmer_samtools_star-fusion_pruned:5694d82381bf039e'
 
     input:
diff --git a/modules/local/starfusion/detect/main.nf b/modules/local/starfusion/detect/main.nf
index 3ed54af2..27396770 100644
--- a/modules/local/starfusion/detect/main.nf
+++ b/modules/local/starfusion/detect/main.nf
@@ -2,6 +2,7 @@ process STARFUSION {
     tag "$meta.id"
     label 'process_high'
 
+    conda "${moduleDir}/environment.yml"
     container 'community.wave.seqera.io/library/dfam_hmmer_samtools_star-fusion_pruned:5694d82381bf039e'
 
     input:
diff --git a/modules/local/starfusion/download/main.nf b/modules/local/starfusion/download/main.nf
index 250f1396..d0668486 100644
--- a/modules/local/starfusion/download/main.nf
+++ b/modules/local/starfusion/download/main.nf
@@ -1,6 +1,7 @@
 process STARFUSION_DOWNLOAD {
     tag 'star-fusion'
 
+    conda "${moduleDir}/environment.yml"
     container 'community.wave.seqera.io/library/dfam_hmmer_samtools_star-fusion_pruned:5694d82381bf039e'
 
     output: