diff --git a/modules/local/fusioninspector/tests/main.nf.test b/modules/local/fusioninspector/tests/main.nf.test deleted file mode 100644 index 0afa34ac..00000000 --- a/modules/local/fusioninspector/tests/main.nf.test +++ /dev/null @@ -1,57 +0,0 @@ -nextflow_process { - - name "Test Process FUSIONINSPECTOR" - script "../main.nf" - process "FUSIONINSPECTOR" - - test("FUSIONINSPECTOR - human") { - - when { - process { - """ - input[0] = [ - [ id:'test_sample' ], - [ - file("https://raw.githubusercontent.com/FusionInspector/FusionInspector/master/test/test.reads_1.fastq.gz"), - file("https://raw.githubusercontent.com/FusionInspector/FusionInspector/master/test/test.reads_2.fastq.gz") - ], - file("https://raw.githubusercontent.com/FusionInspector/FusionInspector/master/test/fusion_targets.A.txt") - ] - input[1] = file("/path/to/reference/genome_lib") - """ - } - } - - then { - assert snapshot(process.out).match() - } - - } - - test("FUSIONINSPECTOR - human - stub") { - - options "-stub" - - when { - process { - """ - input[0] = [ - [ id:'test_stub' ], - [ - file("https://raw.githubusercontent.com/FusionInspector/FusionInspector/master/test/test.reads_1.fastq.gz"), - file("https://raw.githubusercontent.com/FusionInspector/FusionInspector/master/test/test.reads_2.fastq.gz") - ], - file("https://raw.githubusercontent.com/FusionInspector/FusionInspector/master/test/fusion_targets.A.txt") - ] - input[1] = file("https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/GRCh37_gencode_v19_CTAT_lib_Mar012021.STAR_v2.7.11a.plug-n-play.tar.gz") - """ - } - } - - then { - assert snapshot(process.out).match() - } - - } - -}