From 88deea5d83c04644f0904282bd095f1a632b3c9c Mon Sep 17 00:00:00 2001 From: atrigila <18577080+atrigila@users.noreply.github.com> Date: Fri, 29 Nov 2024 16:17:42 +0000 Subject: [PATCH] ci: add `--no_cosmic` flag for tests in CI --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index e1028ed8..2751a476 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -89,7 +89,7 @@ jobs: -stub --build_references \ --outdir /home/runner/work/rnafusion/rnafusion/results --all \ --genomes_base /home/runner/work/rnafusion/rnafusion/results/references \ - --cosmic_username ${{ secrets.COSMIC_USERNAME }} --cosmic_passwd ${{ secrets.COSMIC_PASSWD }} + --no_cosmic - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}" run: |