diff --git a/modules/local/fusioninspector/main.nf b/modules/local/fusioninspector/main.nf index b91d37c9..8745b0e3 100644 --- a/modules/local/fusioninspector/main.nf +++ b/modules/local/fusioninspector/main.nf @@ -3,7 +3,9 @@ process FUSIONINSPECTOR { label 'process_high' conda "${moduleDir}/environment.yml" - container 'trinityctat/fusioninspector:2.10.0' + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data': + 'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}" input: tuple val(meta), path(reads), path(fusion_list) diff --git a/modules/local/starfusion/build/main.nf b/modules/local/starfusion/build/main.nf index 9212cdaf..15b5517a 100644 --- a/modules/local/starfusion/build/main.nf +++ b/modules/local/starfusion/build/main.nf @@ -2,7 +2,9 @@ process STARFUSION_BUILD { tag 'star-fusion' conda "${moduleDir}/environment.yml" - container 'docker.io/trinityctat/starfusion:1.14.0' + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data': + 'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}" input: tuple val(meta), path(fasta) diff --git a/modules/local/starfusion/detect/main.nf b/modules/local/starfusion/detect/main.nf index 94342e99..38a88112 100644 --- a/modules/local/starfusion/detect/main.nf +++ b/modules/local/starfusion/detect/main.nf @@ -3,7 +3,9 @@ process STARFUSION { label 'process_high' conda "${moduleDir}/environment.yml" - container 'docker.io/trinityctat/starfusion:1.14.0' + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data': + 'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}" input: tuple val(meta), path(reads), path(junction) diff --git a/modules/local/starfusion/download/main.nf b/modules/local/starfusion/download/main.nf index 735764c9..6defb6cd 100644 --- a/modules/local/starfusion/download/main.nf +++ b/modules/local/starfusion/download/main.nf @@ -2,7 +2,9 @@ process STARFUSION_DOWNLOAD { tag 'star-fusion' conda "${moduleDir}/environment.yml" - container 'docker.io/trinityctat/starfusion:1.14.0' + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f0bf770bcc7a7af4c9b7a83a88a191bb9e9875759e1985030268df9ffa27dde6/data': + 'community.wave.seqera.io/library/star-fusion:4d0a3a362520dfa6'}" output: path "ctat_genome_lib_build_dir/*" , emit: reference