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NF.ttl
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@prefix NCIT: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#> .
@prefix dcat: <http://www.w3.org/ns/dcat#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix linkml: <https://w3id.org/linkml/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema1: <http://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix shex: <http://www.w3.org/ns/shex#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
<https://w3id.org/synapse/nfosi/vocab/nfosi> a linkml:SchemaDefinition ;
dcterms:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
sh:declare [ sh:namespace skos: ;
sh:prefix "skos" ],
[ sh:namespace linkml: ;
sh:prefix "linkml" ],
[ sh:namespace <https://w3id.org/synapse/nfosi/vocab/> ;
sh:prefix "nf" ],
[ sh:namespace schema1: ;
sh:prefix "schema" ],
[ sh:namespace <https://raw.githubusercontent.com/ncihtan/data-models/main/HTAN.model.jsonld> ;
sh:prefix "htan" ],
[ sh:namespace <https://w3id.org/linkml/examples/personinfo/> ;
sh:prefix "personinfo" ],
[ sh:namespace prov: ;
sh:prefix "prov" ],
[ sh:namespace rdfs: ;
sh:prefix "rdfs" ] ;
linkml:classes <https://w3id.org/synapse/nfosi/vocab/AnimalIndividualTemplate>,
<https://w3id.org/synapse/nfosi/vocab/BiologicalAssayDataTemplate>,
<https://w3id.org/synapse/nfosi/vocab/BiospecimenTemplate>,
<https://w3id.org/synapse/nfosi/vocab/BulkSequencingAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ChIPSeqTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ClinicalAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ElectrophysiologyAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/EpidemiologyDataTemplate>,
<https://w3id.org/synapse/nfosi/vocab/EpigeneticsAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/EpigenomicsAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/FlowCytometryTemplate>,
<https://w3id.org/synapse/nfosi/vocab/GeneralMeasureDataTemplate>,
<https://w3id.org/synapse/nfosi/vocab/GeneticsAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/GenomicsArrayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/GenomicsAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/GenomicsAssayTemplateExtended>,
<https://w3id.org/synapse/nfosi/vocab/HumanCohortTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ImagingAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ImmunoMicroscopyTemplate>,
<https://w3id.org/synapse/nfosi/vocab/LightScatteringAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/MRIAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/MassSpecAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/MaterialScienceAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/MethylationArrayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/MicroscopyAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/NonBiologicalAssayDataTemplate>,
<https://w3id.org/synapse/nfosi/vocab/PartialTemplate>,
<https://w3id.org/synapse/nfosi/vocab/PdxGenomicsAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/PharmacokineticsAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/PlateBasedReporterAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/PortalDataset>,
<https://w3id.org/synapse/nfosi/vocab/PortalPublication>,
<https://w3id.org/synapse/nfosi/vocab/PortalStudy>,
<https://w3id.org/synapse/nfosi/vocab/ProcessedAlignedReadsTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ProcessedExpressionTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ProcessedMergedDataTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ProcessedVariantCallsTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ProteinArrayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ProteinAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ProteomicsAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/Protocol>,
<https://w3id.org/synapse/nfosi/vocab/PublicationTemplate>,
<https://w3id.org/synapse/nfosi/vocab/RNASeqTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ScRNASeqTemplate>,
<https://w3id.org/synapse/nfosi/vocab/ScSequencingAssayTemplate>,
<https://w3id.org/synapse/nfosi/vocab/SourceCodeTemplate>,
<https://w3id.org/synapse/nfosi/vocab/Template>,
<https://w3id.org/synapse/nfosi/vocab/UpdateMilestoneReport>,
<https://w3id.org/synapse/nfosi/vocab/WESTemplate>,
<https://w3id.org/synapse/nfosi/vocab/WGSTemplate>,
<https://w3id.org/synapse/nfosi/vocab/WorkflowReport> ;
linkml:default_curi_maps "semweb_context" ;
linkml:default_prefix "nf" ;
linkml:default_range <https://w3id.org/synapse/nfosi/vocab/string> ;
linkml:emit_prefixes "rdf",
"rdfs",
"skos",
"xsd" ;
linkml:enums <https://w3id.org/synapse/nfosi/vocab/AccessTypeEnum>,
<https://w3id.org/synapse/nfosi/vocab/AgeGroupEnum>,
<https://w3id.org/synapse/nfosi/vocab/AssayEnum>,
<https://w3id.org/synapse/nfosi/vocab/BinaryImagingDiagnosisEnum>,
<https://w3id.org/synapse/nfosi/vocab/BiologicalProcess>,
<https://w3id.org/synapse/nfosi/vocab/BodyPartEnum>,
<https://w3id.org/synapse/nfosi/vocab/BooleanEnum>,
<https://w3id.org/synapse/nfosi/vocab/Cell>,
<https://w3id.org/synapse/nfosi/vocab/CellLineModel>,
<https://w3id.org/synapse/nfosi/vocab/ChannelEnum>,
<https://w3id.org/synapse/nfosi/vocab/ConcentrationUnit>,
<https://w3id.org/synapse/nfosi/vocab/CuratedDataEnum>,
<https://w3id.org/synapse/nfosi/vocab/Data>,
<https://w3id.org/synapse/nfosi/vocab/DataCatalogEnum>,
<https://w3id.org/synapse/nfosi/vocab/DataSeriesEnum>,
<https://w3id.org/synapse/nfosi/vocab/DataStatusEnum>,
<https://w3id.org/synapse/nfosi/vocab/DataSubtypeEnum>,
<https://w3id.org/synapse/nfosi/vocab/DiagnosisEnum>,
<https://w3id.org/synapse/nfosi/vocab/DiseaseFocusEnum>,
<https://w3id.org/synapse/nfosi/vocab/DissociationMethodEnum>,
<https://w3id.org/synapse/nfosi/vocab/DrugScreen>,
<https://w3id.org/synapse/nfosi/vocab/DuoEnum>,
<https://w3id.org/synapse/nfosi/vocab/ExpressionUnitEnum>,
<https://w3id.org/synapse/nfosi/vocab/FileFormatEnum>,
<https://w3id.org/synapse/nfosi/vocab/FundingAgencyEnum>,
<https://w3id.org/synapse/nfosi/vocab/GenePerturbationEnum>,
<https://w3id.org/synapse/nfosi/vocab/GenePerturbationMethodEnum>,
<https://w3id.org/synapse/nfosi/vocab/GenePerturbationTechnologyEnum>,
<https://w3id.org/synapse/nfosi/vocab/GenomicReferenceEnum>,
<https://w3id.org/synapse/nfosi/vocab/Genotype>,
<https://w3id.org/synapse/nfosi/vocab/InheritanceEnum>,
<https://w3id.org/synapse/nfosi/vocab/Institution>,
<https://w3id.org/synapse/nfosi/vocab/LateralManifestationEnum>,
<https://w3id.org/synapse/nfosi/vocab/LibraryPrepEnum>,
<https://w3id.org/synapse/nfosi/vocab/LibraryPreparationMethodEnum>,
<https://w3id.org/synapse/nfosi/vocab/License>,
<https://w3id.org/synapse/nfosi/vocab/MRISequenceEnum>,
<https://w3id.org/synapse/nfosi/vocab/ManifestationEnum>,
<https://w3id.org/synapse/nfosi/vocab/Material>,
<https://w3id.org/synapse/nfosi/vocab/Measurement>,
<https://w3id.org/synapse/nfosi/vocab/Metadata>,
<https://w3id.org/synapse/nfosi/vocab/MosaicismEnum>,
<https://w3id.org/synapse/nfosi/vocab/MouseModel>,
<https://w3id.org/synapse/nfosi/vocab/MultipleImagingDiagnosisEnum>,
<https://w3id.org/synapse/nfosi/vocab/NF1Variant>,
<https://w3id.org/synapse/nfosi/vocab/NeurofibromaManifestationEnum>,
<https://w3id.org/synapse/nfosi/vocab/NonvestibularSchwannomaManifestationEnum>,
<https://w3id.org/synapse/nfosi/vocab/NotApplicableEnum>,
<https://w3id.org/synapse/nfosi/vocab/NucleicAcidSourceEnum>,
<https://w3id.org/synapse/nfosi/vocab/OpticGliomaManifestationEnum>,
<https://w3id.org/synapse/nfosi/vocab/OrganEnum>,
<https://w3id.org/synapse/nfosi/vocab/OrganismSubstance>,
<https://w3id.org/synapse/nfosi/vocab/PainEnum>,
<https://w3id.org/synapse/nfosi/vocab/Percentiles-2SD>,
<https://w3id.org/synapse/nfosi/vocab/PlatformEnum>,
<https://w3id.org/synapse/nfosi/vocab/PlexiformNeurofibromaManifestationEnum>,
<https://w3id.org/synapse/nfosi/vocab/PresenceEnum>,
<https://w3id.org/synapse/nfosi/vocab/ProteinExtractSourceEnum>,
<https://w3id.org/synapse/nfosi/vocab/PubertyOnsetEnum>,
<https://w3id.org/synapse/nfosi/vocab/PublicationAccessibilityEnum>,
<https://w3id.org/synapse/nfosi/vocab/PublicationTypeEnum>,
<https://w3id.org/synapse/nfosi/vocab/ReadPairOrientationEnum>,
<https://w3id.org/synapse/nfosi/vocab/ReadStrandOriginEnum>,
<https://w3id.org/synapse/nfosi/vocab/Resource>,
<https://w3id.org/synapse/nfosi/vocab/RunTypeEnum>,
<https://w3id.org/synapse/nfosi/vocab/SchwannomaManifestationEnum>,
<https://w3id.org/synapse/nfosi/vocab/SexEnum>,
<https://w3id.org/synapse/nfosi/vocab/SpeciesEnum>,
<https://w3id.org/synapse/nfosi/vocab/SpecimenPreparationMethodEnum>,
<https://w3id.org/synapse/nfosi/vocab/SpinalNeuromaManifestationEnum>,
<https://w3id.org/synapse/nfosi/vocab/StrandednessEnum>,
<https://w3id.org/synapse/nfosi/vocab/StudyStatusEnum>,
<https://w3id.org/synapse/nfosi/vocab/TestSummaryEnum>,
<https://w3id.org/synapse/nfosi/vocab/TimeUnit>,
<https://w3id.org/synapse/nfosi/vocab/Tissue>,
<https://w3id.org/synapse/nfosi/vocab/TransplantationType>,
<https://w3id.org/synapse/nfosi/vocab/Tumor>,
<https://w3id.org/synapse/nfosi/vocab/TumorTreatmentEnum>,
<https://w3id.org/synapse/nfosi/vocab/UnknownEnum>,
<https://w3id.org/synapse/nfosi/vocab/VitalStatusEnum>,
<https://w3id.org/synapse/nfosi/vocab/WHOPerformanceStatusScores>,
<https://w3id.org/synapse/nfosi/vocab/WorkflowEnum>,
<https://w3id.org/synapse/nfosi/vocab/WorkingDistanceUnitEnum> ;
linkml:generation_date "2025-03-07T22:48:05"^^xsd:dateTime ;
linkml:id <https://w3id.org/nfosi/> ;
linkml:imports linkml:types ;
linkml:metamodel_version "1.7.0" ;
linkml:slots <https://w3id.org/synapse/nfosi/vocab/Component>,
<https://w3id.org/synapse/nfosi/vocab/Filename>,
<https://w3id.org/synapse/nfosi/vocab/GIST>,
<https://w3id.org/synapse/nfosi/vocab/InChIKey>,
<https://w3id.org/synapse/nfosi/vocab/IrisLischNodules>,
<https://w3id.org/synapse/nfosi/vocab/MPNSTCharacterization>,
<https://w3id.org/synapse/nfosi/vocab/MRISequence>,
<https://w3id.org/synapse/nfosi/vocab/Resource_id>,
<https://w3id.org/synapse/nfosi/vocab/WHOPerformanceStatus>,
<https://w3id.org/synapse/nfosi/vocab/accessRequirements>,
<https://w3id.org/synapse/nfosi/vocab/accessType>,
<https://w3id.org/synapse/nfosi/vocab/acknowledgementStatements>,
<https://w3id.org/synapse/nfosi/vocab/age>,
<https://w3id.org/synapse/nfosi/vocab/ageUnit>,
<https://w3id.org/synapse/nfosi/vocab/aliquotID>,
<https://w3id.org/synapse/nfosi/vocab/antibodyID>,
<https://w3id.org/synapse/nfosi/vocab/aqueductalStenosis>,
<https://w3id.org/synapse/nfosi/vocab/assay>,
<https://w3id.org/synapse/nfosi/vocab/assayTarget>,
<https://w3id.org/synapse/nfosi/vocab/attentionDeficitDisorder>,
<https://w3id.org/synapse/nfosi/vocab/author>,
<https://w3id.org/synapse/nfosi/vocab/auxiliaryAsset>,
<https://w3id.org/synapse/nfosi/vocab/averageBaseQuality>,
<https://w3id.org/synapse/nfosi/vocab/averageInsertSize>,
<https://w3id.org/synapse/nfosi/vocab/averageReadLength>,
<https://w3id.org/synapse/nfosi/vocab/batchID>,
<https://w3id.org/synapse/nfosi/vocab/benefactorId>,
<https://w3id.org/synapse/nfosi/vocab/bisulfiteConversionKitID>,
<https://w3id.org/synapse/nfosi/vocab/bodySite>,
<https://w3id.org/synapse/nfosi/vocab/breastCancer>,
<https://w3id.org/synapse/nfosi/vocab/cafeaulaitMacules>,
<https://w3id.org/synapse/nfosi/vocab/captureArea>,
<https://w3id.org/synapse/nfosi/vocab/cellID>,
<https://w3id.org/synapse/nfosi/vocab/cellType>,
<https://w3id.org/synapse/nfosi/vocab/channel>,
<https://w3id.org/synapse/nfosi/vocab/chipID>,
<https://w3id.org/synapse/nfosi/vocab/chipPosition>,
<https://w3id.org/synapse/nfosi/vocab/citation>,
<https://w3id.org/synapse/nfosi/vocab/comments>,
<https://w3id.org/synapse/nfosi/vocab/compoundDose>,
<https://w3id.org/synapse/nfosi/vocab/compoundDoseUnit>,
<https://w3id.org/synapse/nfosi/vocab/compoundName>,
<https://w3id.org/synapse/nfosi/vocab/concentrationMaterial>,
<https://w3id.org/synapse/nfosi/vocab/concentrationMaterialUnit>,
<https://w3id.org/synapse/nfosi/vocab/concentrationNaCl>,
<https://w3id.org/synapse/nfosi/vocab/concentrationNaClUnit>,
<https://w3id.org/synapse/nfosi/vocab/concreteType>,
<https://w3id.org/synapse/nfosi/vocab/contentSize>,
<https://w3id.org/synapse/nfosi/vocab/contentType>,
<https://w3id.org/synapse/nfosi/vocab/contributor>,
<https://w3id.org/synapse/nfosi/vocab/createdBy>,
<https://w3id.org/synapse/nfosi/vocab/createdOn>,
<https://w3id.org/synapse/nfosi/vocab/creator>,
<https://w3id.org/synapse/nfosi/vocab/currentVersion>,
<https://w3id.org/synapse/nfosi/vocab/dataCollectionMode>,
<https://w3id.org/synapse/nfosi/vocab/dataFileHandleId>,
<https://w3id.org/synapse/nfosi/vocab/dataStatus>,
<https://w3id.org/synapse/nfosi/vocab/dataSubtype>,
<https://w3id.org/synapse/nfosi/vocab/dataType>,
<https://w3id.org/synapse/nfosi/vocab/datasetItemCount>,
<https://w3id.org/synapse/nfosi/vocab/datasetSizeInBytes>,
<https://w3id.org/synapse/nfosi/vocab/dermalNeurofibromas>,
<https://w3id.org/synapse/nfosi/vocab/dermalSchwannoma>,
<https://w3id.org/synapse/nfosi/vocab/description>,
<https://w3id.org/synapse/nfosi/vocab/diagnosis>,
<https://w3id.org/synapse/nfosi/vocab/diagnosisAgeGroup>,
<https://w3id.org/synapse/nfosi/vocab/diffuseDermalNeurofibromas>,
<https://w3id.org/synapse/nfosi/vocab/diseaseFocus>,
<https://w3id.org/synapse/nfosi/vocab/dissociationMethod>,
<https://w3id.org/synapse/nfosi/vocab/documentation>,
<https://w3id.org/synapse/nfosi/vocab/doi>,
<https://w3id.org/synapse/nfosi/vocab/drugScreenType>,
<https://w3id.org/synapse/nfosi/vocab/epidemiologyMetric>,
<https://w3id.org/synapse/nfosi/vocab/etag>,
<https://w3id.org/synapse/nfosi/vocab/experimentId>,
<https://w3id.org/synapse/nfosi/vocab/experimentalCondition>,
<https://w3id.org/synapse/nfosi/vocab/experimentalFactor>,
<https://w3id.org/synapse/nfosi/vocab/experimentalTimepoint>,
<https://w3id.org/synapse/nfosi/vocab/expressionUnit>,
<https://w3id.org/synapse/nfosi/vocab/failedQC>,
<https://w3id.org/synapse/nfosi/vocab/fileCount>,
<https://w3id.org/synapse/nfosi/vocab/fileFormat>,
<https://w3id.org/synapse/nfosi/vocab/fileSize>,
<https://w3id.org/synapse/nfosi/vocab/fundingAgency>,
<https://w3id.org/synapse/nfosi/vocab/genePerturbationTechnology>,
<https://w3id.org/synapse/nfosi/vocab/genePerturbationType>,
<https://w3id.org/synapse/nfosi/vocab/genePerturbed>,
<https://w3id.org/synapse/nfosi/vocab/genomicReference>,
<https://w3id.org/synapse/nfosi/vocab/genomicReferenceLink>,
<https://w3id.org/synapse/nfosi/vocab/germlineMutation>,
<https://w3id.org/synapse/nfosi/vocab/germlineMutationIndicator>,
<https://w3id.org/synapse/nfosi/vocab/gliomaOrEpendymoma>,
<https://w3id.org/synapse/nfosi/vocab/glomusTumor>,
<https://w3id.org/synapse/nfosi/vocab/grantDOI>,
<https://w3id.org/synapse/nfosi/vocab/heartDefect>,
<https://w3id.org/synapse/nfosi/vocab/id>,
<https://w3id.org/synapse/nfosi/vocab/immersion>,
<https://w3id.org/synapse/nfosi/vocab/individualID>,
<https://w3id.org/synapse/nfosi/vocab/individualIdSource>,
<https://w3id.org/synapse/nfosi/vocab/inheritance>,
<https://w3id.org/synapse/nfosi/vocab/initiative>,
<https://w3id.org/synapse/nfosi/vocab/institution>,
<https://w3id.org/synapse/nfosi/vocab/intellectualDisability>,
<https://w3id.org/synapse/nfosi/vocab/isCellLine>,
<https://w3id.org/synapse/nfosi/vocab/isFilteredReads>,
<https://w3id.org/synapse/nfosi/vocab/isMultiIndividual>,
<https://w3id.org/synapse/nfosi/vocab/isMultiSpecimen>,
<https://w3id.org/synapse/nfosi/vocab/isPairedEnd>,
<https://w3id.org/synapse/nfosi/vocab/isPrimaryCell>,
<https://w3id.org/synapse/nfosi/vocab/isStranded>,
<https://w3id.org/synapse/nfosi/vocab/isXenograft>,
<https://w3id.org/synapse/nfosi/vocab/learningDisability>,
<https://w3id.org/synapse/nfosi/vocab/lensAperture>,
<https://w3id.org/synapse/nfosi/vocab/lenticularOpacity>,
<https://w3id.org/synapse/nfosi/vocab/leukemia>,
<https://w3id.org/synapse/nfosi/vocab/libraryKitID>,
<https://w3id.org/synapse/nfosi/vocab/libraryPrep>,
<https://w3id.org/synapse/nfosi/vocab/libraryPreparationMethod>,
<https://w3id.org/synapse/nfosi/vocab/libraryStrand>,
<https://w3id.org/synapse/nfosi/vocab/license>,
<https://w3id.org/synapse/nfosi/vocab/longBoneDysplasia>,
<https://w3id.org/synapse/nfosi/vocab/manifestation>,
<https://w3id.org/synapse/nfosi/vocab/materialType>,
<https://w3id.org/synapse/nfosi/vocab/meanCoverage>,
<https://w3id.org/synapse/nfosi/vocab/meningioma>,
<https://w3id.org/synapse/nfosi/vocab/modelSystemName>,
<https://w3id.org/synapse/nfosi/vocab/modifiedBy>,
<https://w3id.org/synapse/nfosi/vocab/mosaicism>,
<https://w3id.org/synapse/nfosi/vocab/nf1Genotype>,
<https://w3id.org/synapse/nfosi/vocab/nf1GermlineMutation>,
<https://w3id.org/synapse/nfosi/vocab/nf1SomaticMutation>,
<https://w3id.org/synapse/nfosi/vocab/nf2Genotype>,
<https://w3id.org/synapse/nfosi/vocab/nominalMagnification>,
<https://w3id.org/synapse/nfosi/vocab/nonopticGlioma>,
<https://w3id.org/synapse/nfosi/vocab/nonvestibularCranialSchwannoma>,
<https://w3id.org/synapse/nfosi/vocab/nonvestibularSchwannomas>,
<https://w3id.org/synapse/nfosi/vocab/nucleicAcidSource>,
<https://w3id.org/synapse/nfosi/vocab/numberOfSchwannomas>,
<https://w3id.org/synapse/nfosi/vocab/objective>,
<https://w3id.org/synapse/nfosi/vocab/opticGlioma>,
<https://w3id.org/synapse/nfosi/vocab/organ>,
<https://w3id.org/synapse/nfosi/vocab/otherTumors>,
<https://w3id.org/synapse/nfosi/vocab/pH>,
<https://w3id.org/synapse/nfosi/vocab/painStatus>,
<https://w3id.org/synapse/nfosi/vocab/pairsOnDifferentChr>,
<https://w3id.org/synapse/nfosi/vocab/parentId>,
<https://w3id.org/synapse/nfosi/vocab/parentSpecimenID>,
<https://w3id.org/synapse/nfosi/vocab/peakCallingAlgorithm>,
<https://w3id.org/synapse/nfosi/vocab/peripheralNeuropathy>,
<https://w3id.org/synapse/nfosi/vocab/pheochromocytoma>,
<https://w3id.org/synapse/nfosi/vocab/plateName>,
<https://w3id.org/synapse/nfosi/vocab/plateWell>,
<https://w3id.org/synapse/nfosi/vocab/platform>,
<https://w3id.org/synapse/nfosi/vocab/plexiformNeurofibromas>,
<https://w3id.org/synapse/nfosi/vocab/populationCoverage>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__accessType>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__alternateName>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__conditionsOfAccess>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__contributor>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__countryOfOrigin>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__creator>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__dataType>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__dataUseModifiers>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__datePublished>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__description>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__diseaseFocus>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__funder>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__includedInDataCatalog>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__keywords>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__license>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__manifestation>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__measurementTechnique>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__series>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__species>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__studyId>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__subject>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__title>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__visualizeDataOn>,
<https://w3id.org/synapse/nfosi/vocab/portalDataset__yearProcessed>,
<https://w3id.org/synapse/nfosi/vocab/portalPublication__dataset>,
<https://w3id.org/synapse/nfosi/vocab/portalPublication__diseaseFocus>,
<https://w3id.org/synapse/nfosi/vocab/portalPublication__fundingAgency>,
<https://w3id.org/synapse/nfosi/vocab/portalPublication__manifestation>,
<https://w3id.org/synapse/nfosi/vocab/portalPublication__publicationType>,
<https://w3id.org/synapse/nfosi/vocab/portalPublication__studyId>,
<https://w3id.org/synapse/nfosi/vocab/portalPublication__studyName>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__accessRequirements>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__acknowledgementStatements>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__dataStatus>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__dataType>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__diseaseFocus>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__embargoEndDate>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__fundingAgency>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__grantDOI>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__grantEndDate>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__grantStartDate>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__initiative>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__institutions>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__manifestation>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__relatedStudies>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__releasedDate>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__studyFileviewId>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__studyId>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__studyLeads>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__studyName>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__studyStatus>,
<https://w3id.org/synapse/nfosi/vocab/portalStudy__summary>,
<https://w3id.org/synapse/nfosi/vocab/programmingLanguage>,
<https://w3id.org/synapse/nfosi/vocab/progressReportNumber>,
<https://w3id.org/synapse/nfosi/vocab/proportionCoverage10x>,
<https://w3id.org/synapse/nfosi/vocab/proportionCoverage30x>,
<https://w3id.org/synapse/nfosi/vocab/proteinExtractSource>,
<https://w3id.org/synapse/nfosi/vocab/protocolAssay>,
<https://w3id.org/synapse/nfosi/vocab/protocolPurpose>,
<https://w3id.org/synapse/nfosi/vocab/pubertyOnset>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__abstract>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__accessibility>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__author>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__doi>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__grantNumber>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__journal>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__pmid>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__title>,
<https://w3id.org/synapse/nfosi/vocab/publicationTemplate__year>,
<https://w3id.org/synapse/nfosi/vocab/publisher>,
<https://w3id.org/synapse/nfosi/vocab/readDepth>,
<https://w3id.org/synapse/nfosi/vocab/readLength>,
<https://w3id.org/synapse/nfosi/vocab/readPair>,
<https://w3id.org/synapse/nfosi/vocab/readPairOrientation>,
<https://w3id.org/synapse/nfosi/vocab/readStrandOrigin>,
<https://w3id.org/synapse/nfosi/vocab/readsDuplicatedPercent>,
<https://w3id.org/synapse/nfosi/vocab/readsMappedPercent>,
<https://w3id.org/synapse/nfosi/vocab/recordingSource>,
<https://w3id.org/synapse/nfosi/vocab/referenceSequence>,
<https://w3id.org/synapse/nfosi/vocab/referenceSet>,
<https://w3id.org/synapse/nfosi/vocab/relatedDataset>,
<https://w3id.org/synapse/nfosi/vocab/relatedResource>,
<https://w3id.org/synapse/nfosi/vocab/relatedStudies>,
<https://w3id.org/synapse/nfosi/vocab/reporterGene>,
<https://w3id.org/synapse/nfosi/vocab/reporterSubstance>,
<https://w3id.org/synapse/nfosi/vocab/resourceType>,
<https://w3id.org/synapse/nfosi/vocab/runType>,
<https://w3id.org/synapse/nfosi/vocab/runtimePlatform>,
<https://w3id.org/synapse/nfosi/vocab/sampleType>,
<https://w3id.org/synapse/nfosi/vocab/scoliosis>,
<https://w3id.org/synapse/nfosi/vocab/series>,
<https://w3id.org/synapse/nfosi/vocab/sex>,
<https://w3id.org/synapse/nfosi/vocab/skinFoldFreckling>,
<https://w3id.org/synapse/nfosi/vocab/slideID>,
<https://w3id.org/synapse/nfosi/vocab/slideVersion>,
<https://w3id.org/synapse/nfosi/vocab/sourceName>,
<https://w3id.org/synapse/nfosi/vocab/species>,
<https://w3id.org/synapse/nfosi/vocab/specimenID>,
<https://w3id.org/synapse/nfosi/vocab/specimenIDSource>,
<https://w3id.org/synapse/nfosi/vocab/specimenPreparationMethod>,
<https://w3id.org/synapse/nfosi/vocab/specimenType>,
<https://w3id.org/synapse/nfosi/vocab/sphenoidDysplasia>,
<https://w3id.org/synapse/nfosi/vocab/spinalNeurofibromas>,
<https://w3id.org/synapse/nfosi/vocab/spinalSchwannoma>,
<https://w3id.org/synapse/nfosi/vocab/stature>,
<https://w3id.org/synapse/nfosi/vocab/studyFileviewId>,
<https://w3id.org/synapse/nfosi/vocab/studyId>,
<https://w3id.org/synapse/nfosi/vocab/studyLeads>,
<https://w3id.org/synapse/nfosi/vocab/studyName>,
<https://w3id.org/synapse/nfosi/vocab/studyStatus>,
<https://w3id.org/synapse/nfosi/vocab/subcutaneousNodularNeurofibromas>,
<https://w3id.org/synapse/nfosi/vocab/summary>,
<https://w3id.org/synapse/nfosi/vocab/targetCaptureKitID>,
<https://w3id.org/synapse/nfosi/vocab/targetDepth>,
<https://w3id.org/synapse/nfosi/vocab/timepointUnit>,
<https://w3id.org/synapse/nfosi/vocab/title>,
<https://w3id.org/synapse/nfosi/vocab/totalReads>,
<https://w3id.org/synapse/nfosi/vocab/transplantationRecipientSpecies>,
<https://w3id.org/synapse/nfosi/vocab/transplantationRecipientTissue>,
<https://w3id.org/synapse/nfosi/vocab/transplantationType>,
<https://w3id.org/synapse/nfosi/vocab/tumorTreatmentStatus>,
<https://w3id.org/synapse/nfosi/vocab/tumorType>,
<https://w3id.org/synapse/nfosi/vocab/type>,
<https://w3id.org/synapse/nfosi/vocab/vascularDisease>,
<https://w3id.org/synapse/nfosi/vocab/vestibularSchwannoma>,
<https://w3id.org/synapse/nfosi/vocab/vitalStatus>,
<https://w3id.org/synapse/nfosi/vocab/workflow>,
<https://w3id.org/synapse/nfosi/vocab/workflowLink>,
<https://w3id.org/synapse/nfosi/vocab/workingDistance>,
<https://w3id.org/synapse/nfosi/vocab/workingDistanceUnit>,
<https://w3id.org/synapse/nfosi/vocab/yearProcessed>,
<https://w3id.org/synapse/nfosi/vocab/yearPublished> ;
linkml:source_file "NF.yaml" ;
linkml:source_file_date "2025-03-07T22:48:03"^^xsd:dateTime ;
linkml:source_file_size 297911 ;
linkml:types <https://w3id.org/synapse/nfosi/vocab/boolean>,
<https://w3id.org/synapse/nfosi/vocab/curie>,
<https://w3id.org/synapse/nfosi/vocab/date>,
<https://w3id.org/synapse/nfosi/vocab/date_or_datetime>,
<https://w3id.org/synapse/nfosi/vocab/datetime>,
<https://w3id.org/synapse/nfosi/vocab/decimal>,
<https://w3id.org/synapse/nfosi/vocab/double>,
<https://w3id.org/synapse/nfosi/vocab/float>,
<https://w3id.org/synapse/nfosi/vocab/integer>,
<https://w3id.org/synapse/nfosi/vocab/jsonpath>,
<https://w3id.org/synapse/nfosi/vocab/jsonpointer>,
<https://w3id.org/synapse/nfosi/vocab/ncname>,
<https://w3id.org/synapse/nfosi/vocab/nodeidentifier>,
<https://w3id.org/synapse/nfosi/vocab/objectidentifier>,
<https://w3id.org/synapse/nfosi/vocab/sparqlpath>,
<https://w3id.org/synapse/nfosi/vocab/string>,
<https://w3id.org/synapse/nfosi/vocab/time>,
<https://w3id.org/synapse/nfosi/vocab/uri>,
<https://w3id.org/synapse/nfosi/vocab/uriorcurie> .
<https://w3id.org/synapse/nfosi/vocab/%2B/%2B> skos:definition "Homozygous wildtype" .
<https://w3id.org/synapse/nfosi/vocab/%2B/-> skos:definition "Heterozygous deletion or mutation" .
<https://w3id.org/synapse/nfosi/vocab/-/-> skos:definition "Homozygous deletion or mutation." .
<https://w3id.org/synapse/nfosi/vocab/10x> dcterms:source <https://github.com/HumanCellAtlas/metadata-schema/blob/master/json_schema/type/process/sequencing/library_preparation_process.json> ;
skos:definition "10x Genomics library preparation" .
<https://w3id.org/synapse/nfosi/vocab/10x%20Visium%20Spatial%20Gene%20Expression> skos:definition "10x Genomics product that includes special slides, reagents and technology to allow whole transcriptome profiling with morphological (spatial) context in FFPE or fresh-frozen tissues. Vendor ref: https://www.10xgenomics.com/products/spatial-gene-expression" ;
linkml:meaning <http://www.ebi.ac.uk/efo/EFO_0010961> .
<https://w3id.org/synapse/nfosi/vocab/10x_v2> skos:definition "" ;
linkml:meaning <https://github.com/HumanCellAtlas/metadata-schema/blob/master/json_schema/type/process/sequencing/library_preparation_process.json> .
<https://w3id.org/synapse/nfosi/vocab/28cNF> skos:definition "A primary cutaneous neurofibroma cell line; not broadly available. See the immortalized version (i28NF)." .
<https://w3id.org/synapse/nfosi/vocab/2D%20AlamarBlue%20absorbance> skos:definition "Cell viability assay based on detection of AlamarBlue (resazurin). Living cells reduce blue, non-fluorescent resazurin to the red, fluorescent molecule resorufin. The amount of fluorescence or absorbance is proportional to the number of living cells and corresponds to the cell’s metabolic activity. For the absorbance-based assay, absorbance can be read at 570 nm." ;
linkml:meaning <https://www.thermofisher.com/us/en/home/life-science/cell-analysis/fluorescence-microplate-assays/microplate-assays-cell-viability/alamarblue-assay-cell-viability.html> .
<https://w3id.org/synapse/nfosi/vocab/2D%20AlamarBlue%20fluorescence> skos:definition "Cell viability assay based on detection of AlamarBlue (resazurin). Living cells reduce blue, non-fluorescent resazurin to the red, fluorescent molecule resorufin. The amount of fluorescence or absorbance is proportional to the number of living cells and corresponds to the cell’s metabolic activity. For the fluorescence-based assay, color change and fluorescence can be detected using 560/590 nm (excitation/emission)." ;
linkml:meaning <https://www.thermofisher.com/us/en/home/life-science/cell-analysis/fluorescence-microplate-assays/microplate-assays-cell-viability/alamarblue-assay-cell-viability.html> .
<https://w3id.org/synapse/nfosi/vocab/2D%20CellTiter-Glo> dcterms:source <https://www.promega.com/products/cell-health-assays/cell-viability-and-cytotoxicity-assays/celltiter_glo-2_0-assay/?catNum=G9241> ;
skos:definition "Commercial platform for cell viability assay based on detection of ATP." .
<https://w3id.org/synapse/nfosi/vocab/2D%20Incucyte> dcterms:source <https://www.essenbioscience.com/en/resources/documents/> ;
skos:definition "Commercial platform for cell viability assay on a 2D monolayer model." .
<https://w3id.org/synapse/nfosi/vocab/3D%20confocal%20imaging> skos:definition "Confocal microscopy with 3D reconstruction of the sample tissue." ;
linkml:meaning <https://pubmed.ncbi.nlm.nih.gov/34331281> .
<https://w3id.org/synapse/nfosi/vocab/3D%20electron%20microscopy> skos:definition "Three-dimensional (3D) reconstruction of single, transparent objects from a collection of projection images recorded with a transmission electron microscope. It offers the opportunity to obtain 3D information on structural cellular arrangements with a high resolution." ;
linkml:meaning <http://purl.obolibrary.org/obo/MI_0410> .
<https://w3id.org/synapse/nfosi/vocab/3D%20imaging> skos:definition "Technique to produce 3D images to visualize important structures in great detail. To produce 3D images, many scans are made, and then combined by computers to produce a 3D model, which can then be manipulated. 3D ultrasounds are produced using a somewhat similar technique." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C18485> .
<https://w3id.org/synapse/nfosi/vocab/3D%20microtissue%20viability> skos:definition "Cell viability assay on a 3D microtissue model." ;
linkml:meaning <https://www.ncbi.nlm.nih.gov/books/NBK343426/> .
<https://w3id.org/synapse/nfosi/vocab/3PNF_FiPSsv_PM_2> skos:definition "" ;
linkml:meaning <https://web.expasy.org/cellosaurus/CVCL_UN11> .
<https://w3id.org/synapse/nfosi/vocab/3PNF_SiPSsv_MM_11> skos:definition "" ;
linkml:meaning <https://web.expasy.org/cellosaurus/CVCL_UN12> .
<https://w3id.org/synapse/nfosi/vocab/5PNF_TDiPSsv_MM_4> skos:definition "" ;
linkml:meaning <https://web.expasy.org/cellosaurus/CVCL_UN13> .
<https://w3id.org/synapse/nfosi/vocab/5PNF_TDiPSsv_PM_6> skos:definition "" ;
linkml:meaning <https://web.expasy.org/cellosaurus/CVCL_UN14> .
<https://w3id.org/synapse/nfosi/vocab/6PNF_SiPSrv_PM_2> skos:definition "" ;
linkml:meaning <https://web.expasy.org/cellosaurus/CVCL_UN15> .
<https://w3id.org/synapse/nfosi/vocab/7PNF_SiPSrv_PM_12> skos:definition "" ;
linkml:meaning <https://web.expasy.org/cellosaurus/CVCL_UN16> .
<https://w3id.org/synapse/nfosi/vocab/7T%20Bruker%20Biospec> skos:definition "A preclinical MRI system designed for advanced imaging of small animals" ;
linkml:meaning <https://www.bruker.com/en/products-and-solutions/preclinical-imaging/mri/biospec-maxwell.html> .
<https://w3id.org/synapse/nfosi/vocab/7z> skos:definition "A compressed archive file format that supports several different data compression, encryption and pre-processing filters." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C80224> .
<https://w3id.org/synapse/nfosi/vocab/90-8> skos:definition "" ;
linkml:meaning <https://web.expasy.org/cellosaurus/CVCL_1B47> .
<https://w3id.org/synapse/nfosi/vocab/AC007-hTERT> skos:definition "Human arachnoid cell line" .
<https://w3id.org/synapse/nfosi/vocab/ANNUBP> skos:definition "Atypical neurofibromatous neoplasms of uncertain biologic potential is a provisional classification for lesions displaying at least two features: atypia, loss of neurofibroma architecture, high cellularity, and/or mitotic activity >1/50 but <3/10 high power fields. They can be inconsistently diagnosed as atypical neurofibroma or low-grade MPNST. See https://pubmed.ncbi.nlm.nih.gov/28551330/." .
<https://w3id.org/synapse/nfosi/vocab/ATAC-seq> skos:definition "Open chromatin regions measured by sequencing DNA after assay for transposase-accessible chromatin (ATAC) treatment" ;
linkml:meaning <http://purl.obolibrary.org/obo/OBI_0002039> .
<https://w3id.org/synapse/nfosi/vocab/ATPase%20activity%20assay> skos:definition "As an assay used for drug discovery, measures enzymatic ATP hydrolysis to help assess levels of enzymatic activity induced by a candidate drug molecule." ;
skos:editorialNote "See also https://www.bellbrooklabs.com/atpase-activity-assay-for-drug-discovery/ for discussion" ;
linkml:meaning <http://purl.obolibrary.org/obo/MI_0880> .
<https://w3id.org/synapse/nfosi/vocab/Active> skos:definition "The project is in the performance period between grant start and grant end dates." .
<https://w3id.org/synapse/nfosi/vocab/Administrative%20Metadata> skos:definition "Information to help manage a resource, like resource type, permissions, and when and how it was created." .
<https://w3id.org/synapse/nfosi/vocab/Affymetrix%20Genome-Wide%20Human%20SNP%205.0%20Array> dcterms:source <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL6804> ;
skos:definition "Affymetrix Genome-Wide Human SNP 5.0 Array" .
<https://w3id.org/synapse/nfosi/vocab/Affymetrix%20Genome-Wide%20Human%20SNP%206.0%20Array> dcterms:source <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL6801> ;
skos:definition "Affymetrix Genome-Wide Human SNP 6.0 Array" .
<https://w3id.org/synapse/nfosi/vocab/Affymetrix%20Human%20Gene%201.0%20ST%20Array> dcterms:source <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL6244> ;
skos:definition "Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] in situ oligonucleotide" .
<https://w3id.org/synapse/nfosi/vocab/Affymetrix%20Human%20Genome%20U133%20Plus%202.0%20Array> dcterms:source <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL570> ;
skos:definition "Affymetrix Human Genome U133 Plus 2.0 Array" .
<https://w3id.org/synapse/nfosi/vocab/Affymetrix%20U133AB> skos:definition "" .
<https://w3id.org/synapse/nfosi/vocab/AggregatedData> skos:definition "Summary or group-level data." .
<https://w3id.org/synapse/nfosi/vocab/Agilent%2044Karray> skos:definition "" .
<https://w3id.org/synapse/nfosi/vocab/Albany%20Medical%20College> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Albert%20Einstein%20College%20of%20Medicine> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/AlgometRx%20Nociometer> skos:definition "Assay that can selectively measure the sensitivity of three different nerve fiber types. An overall score can be derived to indicate the type of pain a person is experiencing and can be used to monitor how well a patient responds to treatment of pain." .
<https://w3id.org/synapse/nfosi/vocab/AlignedReads> skos:definition "Aligned reads output from alignment workflows" ;
linkml:meaning <https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=aligned_reads> .
<https://w3id.org/synapse/nfosi/vocab/Alliant%20International%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/American%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Anaplastic%20Astrocytoma> skos:definition "AASTR" ;
linkml:meaning <https://oncotree.mskcc.org/?version=oncotree_latest_stable&field=AASTR> .
<https://w3id.org/synapse/nfosi/vocab/Anaplastic%20Ganglioglioma> skos:definition "AGNG" ;
linkml:meaning <https://oncotree.mskcc.org/?version=oncotree_latest_stable&field=AGNG> .
<https://w3id.org/synapse/nfosi/vocab/Anaplastic%20Pilocytic%20Astrocytoma> skos:definition "Pilocytic astrocytoma with anaplastic features exhibits a spectrum of morphologies and is associated with decreased survival when compared with typical PA." ;
linkml:meaning <https://doi.org/10.1097/pas.0b013e3181c75238> .
<https://w3id.org/synapse/nfosi/vocab/Anaplastic%20Pleomorphic%20Xanthoastrocytoma> skos:definition "APXA" ;
linkml:meaning <https://oncotree.mskcc.org/?version=oncotree_latest_stable&field=APXA> .
<https://w3id.org/synapse/nfosi/vocab/AnnotatedGermlineVariants> skos:definition "Germline variants annotated with some annotation workflow" .
<https://w3id.org/synapse/nfosi/vocab/AnnotatedSomaticVariants> skos:definition "Somatic variants annotated with some annotation workflow" ;
linkml:meaning <https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=annotated_somatic_mutation> .
<https://w3id.org/synapse/nfosi/vocab/Arizona%20State%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Atypical%20Pilocytic%20Astrocytoma> skos:definition "Pilocytic astrocytoma with atypical features." .
<https://w3id.org/synapse/nfosi/vocab/Auburn%20University%2C%20Auburn> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Augusta%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Available> skos:definition "Data is fully available for download for the project (with fulfillment of any governance requirements)." .
<https://w3id.org/synapse/nfosi/vocab/B-lymphocytes> skos:definition "A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive." ;
linkml:meaning <https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000236> .
<https://w3id.org/synapse/nfosi/vocab/B6%3B129-Trp53tm1Tyj%20Nf1tm1Tyj%20Suz12Gt%28Betageo%291Khe/KcichJ> skos:definition "" ;
linkml:meaning <https://www.jax.org/strain/027678> .
<https://w3id.org/synapse/nfosi/vocab/B6%3B129S2-Trp53tm1Tyj%20Nf1tm1Tyj/J> skos:definition "" ;
linkml:meaning <https://www.jax.org/strain/008191> .
<https://w3id.org/synapse/nfosi/vocab/B6.129%28Cg%29-Nf1tm1Par/J> skos:definition "" ;
linkml:meaning <https://www.jax.org/strain/017640> .
<https://w3id.org/synapse/nfosi/vocab/B6.129S1-Nf1tm1Cbr/J> skos:definition "" ;
linkml:meaning <https://www.jax.org/strain/007923> .
<https://w3id.org/synapse/nfosi/vocab/B6.129S2-Nf1tm1Tyj/J> skos:definition "" ;
linkml:meaning <https://www.jax.org/strain/008192> .
<https://w3id.org/synapse/nfosi/vocab/BD%20FACS%20Calibur> dcterms:source <https://www.bd.com/documents/bd-legacy/brochures/biosciences/BDB_BD-FACSCalibur-Flow-Cytometry-BR-TR.pdf> ;
skos:definition "Flow cytometry system." .
<https://w3id.org/synapse/nfosi/vocab/BD%20FACSymphony> dcterms:source <https://lp.bd.com/202204-BDB22-EU_EN-Research_instruments-Symphony_family-LP_LP-EN-01-MainLP.html?utm_medium=cpc&utm_source=Linkedin&utm_campaign=202204-FY22-BDB-EU_EN-Research_instruments-Symphony_family&utm_term=Family> ;
skos:definition "Flow cytometry system" .
<https://w3id.org/synapse/nfosi/vocab/BGISEQ-500> dcterms:source <https://www.bgi.com/wp-content/uploads/sites/4/2017/05/GLOBAL_BGISEQ-500_WholeGenomeSeq_ServiceOverview_04-17.pdf> ;
skos:definition "(From vendor) BGISEQ-500 is an industry leading high-throughput sequencing solution, powered by combinatorial Probe-Anchor Synthesis (cPAS) and improved DNA Nanoballs (DNB™) technology." .
<https://w3id.org/synapse/nfosi/vocab/BJFF.6> skos:definition "iPSCs created with foreskin fibroblasts." .
<https://w3id.org/synapse/nfosi/vocab/Baylor%20College%20of%20Medicine> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Baylor%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Ben-Men-1> skos:definition "Human meningioma cell line (RRID:CVCL_1959)" ;
linkml:meaning <https://web.expasy.org/cellosaurus/CVCL_1959> .
<https://w3id.org/synapse/nfosi/vocab/Bionano%20Irys> dcterms:source <https://bionanogenomics.com/products/irys/> ;
skos:definition "Performs whole genome mapping in a nanoscale fluidic environment enabling the structure of the genome to be imaged and then analyzed at the single molecule level" .
<https://w3id.org/synapse/nfosi/vocab/Boise%20State%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Boston%20College> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Boston%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Bowling%20Green%20State%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Brandeis%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/BrdU%20proliferation%20assay> skos:definition "A cell proliferation assay in which cells are cultured in the presence of BrdU which is incorporated into newly synthesized DNA of replicating cells (during the S phase of the cell cycle)." ;
linkml:meaning <http://purl.obolibrary.org/obo/OBI_0000664> .
<https://w3id.org/synapse/nfosi/vocab/Brigham%20Young%20University%2C%20Provo> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Brown%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Buccal%20Mucosa> skos:definition "The mucosal membranes located on the inside of the cheek, in the buccal cavity.The inner lining of the cheeks." ;
linkml:meaning <http://purl.obolibrary.org/obo/BTO_0003833> .
<https://w3id.org/synapse/nfosi/vocab/Buffy%20Coat> skos:definition "The middle layer of an anticoagulated blood specimen following separation by centrifugation. It contains most of the white blood cells and platelets." ;
linkml:meaning <http://purl.obolibrary.org/obo/BTO_0006181> .
<https://w3id.org/synapse/nfosi/vocab/Bursa%20Of%20Fabricius> skos:definition "An epithelial outgrowth of lymphoid tissue in the cloaca of young birds, responsible for B-lymphocyte maturation. It undergoes atrophy and involution at six months of age." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C111141> .
<https://w3id.org/synapse/nfosi/vocab/C57BL/6J> skos:definition "C57BL/6 is the most widely used inbred strain. It is commonly used as a general purpose strain and background strain for the generation of congenics carrying both spontaneous and induced mutations." ;
linkml:meaning <https://www.jax.org/strain/000664> .
<https://w3id.org/synapse/nfosi/vocab/CAPP-seq> dcterms:source <https://www.redjournal.org/article/S0360-3016(16)30438-2/fulltext> ;
skos:definition "Cancer Personalized Profiling by deep sequencing (CAPP-seq) is a novel blood-based assay that uses next-generating sequencing to quantitate circulating tumor DNA (ctDNA)" ;
linkml:meaning <http://www.ebi.ac.uk/efo/EFO_0008672> .
<https://w3id.org/synapse/nfosi/vocab/CC%20BY-NC> dcterms:source <https://creativecommons.org/licenses/by-nc/4.0/> ;
dcterms:title "Creative Commons Attribution-NonCommercial 4.0 International" ;
skos:definition """This license is one of the Creative Commons licenses and allows users to share and adapt the dataset if they give credit to the copyright holder and do not use the dataset for any commercial purposes.
""" .
<https://w3id.org/synapse/nfosi/vocab/CC%20BY-NC-ND> dcterms:source <https://creativecommons.org/licenses/by-nc-nd/4.0/> ;
dcterms:title "Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International" ;
skos:definition """This license is one of the Creative Commons licenses and allows users to use only your unmodified dataset if they give credit to the copyright holder and do not share it for commercial purposes. Users cannot make any additions, transformations or changes to the dataset under this license.
""" .
<https://w3id.org/synapse/nfosi/vocab/CC%20BY-NC-SA> dcterms:source <https://creativecommons.org/licenses/by-nc-sa/4.0/> ;
dcterms:title "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International" ;
skos:definition """This license is one of the Creative Commons licenses and allows users to share the dataset only if they (1) give credit to the copyright holder, (2) do not use the dataset for any commercial purposes, and (3) distribute any additions, transformations or changes to the dataset under this same license.
""" .
<https://w3id.org/synapse/nfosi/vocab/CC%20BY-ND> dcterms:source <https://creativecommons.org/licenses/by-nd/4.0/> ;
dcterms:title "Creative Commons Attribution-NoDerivatives 4.0 International" ;
skos:definition """This license is one of the Creative Commons licenses and allows users to share the dataset if they give credit to copyright holder, but they cannot make any additions, transformations or changes to the dataset under this license.
""" .
<https://w3id.org/synapse/nfosi/vocab/CC%20BY-SA> dcterms:source <https://creativecommons.org/licenses/by-nc-sa/4.0/> ;
dcterms:title "Creative Commons Attribution-ShareAlike 4.0 International" ;
skos:definition """This license is one of the open Creative Commons licenses and allows users to share and adapt the dataset as long as they give credit to the copyright holder and distribute any additions, transformations or changes to the dataset under this same https://creativecommons.org/licenses/by/4.0/
""" .
<https://w3id.org/synapse/nfosi/vocab/CC-0> dcterms:source <https://creativecommons.org/publicdomain/zero/1.0/> ;
dcterms:title "Creative Commons Zero" ;
skos:definition "A Creative Commons license and is like a public domain dedication. The copyright holder surrenders rights in a dataset using this license." .
<https://w3id.org/synapse/nfosi/vocab/CC-BY> dcterms:source <https://creativecommons.org/licenses/by/4.0/> ;
dcterms:title "Creative Commons Attribution 4.0 International" ;
skos:definition "This license is one of the open Creative Commons licenses and allows users to share and adapt the dataset so long as they give credit to the copyright holder." .
<https://w3id.org/synapse/nfosi/vocab/CD138%2B> skos:definition "" .
<https://w3id.org/synapse/nfosi/vocab/CD8%2B%20T-Cells> skos:definition "Is a T lymphocyte (a type of white blood cell) that kills cancer cells, cells that are infected (particularly with viruses), or cells that are damaged in other ways." ;
linkml:meaning <https://en.wikipedia.org/wiki/Cytotoxic_T_cell> .
<https://w3id.org/synapse/nfosi/vocab/CDX%20tissue> skos:definition "Cell line derived xenograft tissue" ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C156443> .
<https://w3id.org/synapse/nfosi/vocab/CEL-seq> dcterms:source <https://github.com/HumanCellAtlas/metadata-schema/blob/master/json_schema/type/process/sequencing/library_preparation_process.json> ;
skos:definition "CEL-Seq library preparation" .
<https://w3id.org/synapse/nfosi/vocab/CNON> skos:definition "Cultured Neuronal cells derived from Olfactory Neuroepithelium" ;
linkml:meaning <https://www.synapse.org/#!Synapse:syn4590897> .
<https://w3id.org/synapse/nfosi/vocab/CNVkit> dcterms:source <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004873> .
<https://w3id.org/synapse/nfosi/vocab/CODEX> skos:definition "CODEX imaging." .
<https://w3id.org/synapse/nfosi/vocab/CUNY%2C%20City%20College> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/CUNY%2C%20Hunter%20College> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/CUNY%2C%20John%20Jay%20College%20of%20Criminal%20Justice> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/CUNY%2C%20Queens%20College> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/CUT%26RUN> skos:definition "Cleavage Under Targets and Release Using Nuclease (CUT&RUN) is a chromatin profiling strategy in which antibody-targeted controlled cleavage by micrococcal nuclease releases specific protein-DNA complexes into the supernatant for paired-end DNA sequencing. (doi:10.7554/eLife.21856)" .
<https://w3id.org/synapse/nfosi/vocab/California%20Institute%20of%20Technology> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/California%20Polytechnic%20State%20University%2C%20San%20Luis%20Obispo> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/California%20State%20University%2C%20Long%20Beach> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/California%20State%20University%2C%20Northridge> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/California%20State%20University%2C%20Sacramento> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Caliper> skos:definition "General instrument or machine for volume measurements." ;
linkml:meaning <http://snomed.info/id/44056008> .
<https://w3id.org/synapse/nfosi/vocab/Carnegie%20Mellon%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Case%20Western%20Reserve%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Catholic%20University%20of%20America> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Cellular%20Neurofibroma> skos:definition "A neurofibroma characterized by the presence of areas with increased cellularity." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C41427> .
<https://w3id.org/synapse/nfosi/vocab/Central%20Michigan%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/ChIP-seq> skos:definition "Chromatin immuno-precipitation followed by sequencing" ;
linkml:meaning <http://purl.obolibrary.org/obo/OBI_0000716> .
<https://w3id.org/synapse/nfosi/vocab/Chapman%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Cherry%20Imaging%20FACE%20Platform> dcterms:source <https://www.cherryimaging.com/home> ;
skos:definition "(From vendor) A micro-ultrasound imaging system for anatomical, hemodynamic, functional, and molecular data all in one platform." .
<https://w3id.org/synapse/nfosi/vocab/Cherry%20Imaging%20TRACE%20Platform> dcterms:source <https://www.cherryimaging.com/home> ;
skos:definition "(From vendor) Full skin 3D imaging platform designed for research; uses a handheld scanner to capture thousands of images from multiple angles, which can be analyzed to create precise skin morphology model with a 100 micron accuracy to assess treatment results over time." .
<https://w3id.org/synapse/nfosi/vocab/Child%20Behavior%20Checklist%20for%20Ages%201.5-5> skos:definition """"A standardized measure designed to detect behavioral and emotional problems in children 1.5-5 years old. The forms obtain parents', daycare providers', and teachers' ratings of 99 problem items plus descriptions of problems, disabilities, what concerns respondents most about the child, and the best things about the child. [ NCI ]".
""" ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C165712> .
<https://w3id.org/synapse/nfosi/vocab/Child%20Behavior%20Checklist%20for%20Ages%206-18> skos:definition """"A standardized measure designed to detect behavioral and emotional problems in children and adolescents. It is completed by the parent/caretaker who spends the most time with the child and provides ratings for 20 competence and 120 problem items. [ NCI ]"
""" ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C165711> .
<https://w3id.org/synapse/nfosi/vocab/Children%27s%20Dermatology%20Life%20Quality%20Index%20Questionnaire> skos:definition "A standardized rating scale originally developed by Lewis-Jones and Finlay in 1995. This instrument is used to make quality of life assessment in children with skin conditions. [ NCI ]" ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C119092> .
<https://w3id.org/synapse/nfosi/vocab/Children%27s%20Hospital%20of%20Philadelphia> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Children%27s%20National> linkml:meaning <https://ror.org/03wa2q724> .
<https://w3id.org/synapse/nfosi/vocab/Chromium%20X> dcterms:source <https://www.10xgenomics.com/chromium-x> ;
skos:definition "(From 10x Genomics) Single-cell platform that can analyze hundreds to hundreds of thousands of cells in single run for e.g. gene expression, chromatin accessibility, cell surface proteins, immune clonotype, antigen specificity, CRISPR perturbation screens)." .
<https://w3id.org/synapse/nfosi/vocab/Cincinnati%20Children%27s%20Hospital%20Medical%20Center> linkml:meaning <https://ror.org/01hcyya48> .
<https://w3id.org/synapse/nfosi/vocab/City%20of%20Hope> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Clarkson%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Clemson%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Cleveland%20State%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Clinical%20Care%20Use> skos:definition "Clinical Care Use" .
<https://w3id.org/synapse/nfosi/vocab/Cold%20Spring%20Harbor%20Laboratory> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Collaboration%20Required> skos:definition "Collaboration Required - PI Contact information required" .
<https://w3id.org/synapse/nfosi/vocab/Colorado%20State%20University%2C%20Fort%20Collins> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Colorectal%20Adenocarcinoma> skos:definition "(COADREAD) The most common type of colorectal carcinoma. It is chararactized by the presence of malignant glandular epithelial cells invading through the muscularis mucosa into the submucosa." ;
linkml:meaning <obo:NCIT_C5105> .
<https://w3id.org/synapse/nfosi/vocab/Colorectal%20Carcinoma> skos:definition "A malignant epithelial neoplasm that arrises from the colon or rectum and invates through the muscularis mucosa into the submucosa. 95 percent of colorectal carcinoma are colorectal adenocarcinoma -- use this more specific term if it applies." ;
linkml:meaning <obo:NCIT_C2955> .
<https://w3id.org/synapse/nfosi/vocab/Columbia%20U.%20in%20the%20City%20of%20New%20York> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Completed> skos:definition "The project has reached the grant end date and all intended data has been generated and uploaded." .
<https://w3id.org/synapse/nfosi/vocab/Controlled%20Access> skos:definition """Access is restricted and only available after fulfilling specific requirements, such as submitting a research statement or getting approval directly from the data owner through Synapse. Note that for datasets, if any component file is under controlled access, the entire dataset is considered to be under controlled access.
""" .
<https://w3id.org/synapse/nfosi/vocab/CopyNumberVariants> skos:definition "Copy number variants" ;
linkml:meaning <https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=copy_number_variation> .
<https://w3id.org/synapse/nfosi/vocab/Cornell%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Corsi%20blocks> skos:definition """A visuospatial counterpart to the verbal-memory span task (Milner, 1971). Over the years, it has frequently been used to assess visuospatial short-term memory performance in adults (e.g. Smyth & Scholey, 1992), children (e.g. Orsini, Schiappa, & Grossi, 1981), and patients with neuropsychological deficits.
""" ;
linkml:meaning <https://www.cognitiveatlas.org/task/id/trm_4da881dace79c/> .
<https://w3id.org/synapse/nfosi/vocab/Counts> skos:definition "Either raw read counts or normalized counts (use the more specific term if possible)." .
<https://w3id.org/synapse/nfosi/vocab/Creighton%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Cryopreserved> skos:definition "Cryopreserved" .
<https://w3id.org/synapse/nfosi/vocab/Cy3> skos:definition "Fluorescent dye used for the green channel on an array" ;
linkml:meaning <http://purl.obolibrary.org/obo/FBbi_00000449> .
<https://w3id.org/synapse/nfosi/vocab/Cy5> skos:definition "Fluorescent dye used for the red channel on an array" ;
linkml:meaning <http://purl.obolibrary.org/obo/FBbi_00000450> .
<https://w3id.org/synapse/nfosi/vocab/DESeq2> dcterms:source <https://bioconductor.org/packages/release/bioc/html/DESeq2.html> .
<https://w3id.org/synapse/nfosi/vocab/DICOM> skos:definition "A comprehensive set of standards for communications between medical imaging devices, including handling, storing and transmitting information in medical imaging. It includes a file format definition and a network communication protocol." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C49059> .
<https://w3id.org/synapse/nfosi/vocab/DNA> skos:definition "DNA (deoxyribonucleic acid) is a polymer of nucleotides and is the genetic material in organisms and some viruses." .
<https://w3id.org/synapse/nfosi/vocab/DNA%20optical%20mapping> skos:definition "Fluorescent imaging of linearly extended DNA molecules to probe information patterns along the molecules" ;
linkml:meaning <https://doi.org/10.1016/j.copbio.2013.01.009> .
<https://w3id.org/synapse/nfosi/vocab/DRG/nerve%20root%20neurosphere%20cell> skos:definition "Dorsal root ganglia/nerve root neurosphere cells (DNSCs) are cultured from embryonic DRGs/nerve roots and have been used in in vitro sphere assays to study the origin of para-spinal neurofibromas. See reference PMC4254535" .
<https://w3id.org/synapse/nfosi/vocab/Danio%20rerio> skos:definition "Danio rerio with taxonomy ID: 7955 and Genbank common name: zebrafish" ;
linkml:meaning <https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=7955&lvl=3&lin=f&keep=1&srchmode=1&unlock> .
<https://w3id.org/synapse/nfosi/vocab/Dartmouth%20College> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Data%20Not%20Expected> skos:definition "Data is not expected for the project." .
<https://w3id.org/synapse/nfosi/vocab/Data%20Pending> skos:definition "There is no data yet in the project because it is still being generated or has not yet been uploaded yet." .
<https://w3id.org/synapse/nfosi/vocab/DeepVariant> dcterms:source <https://github.com/google/deepvariant> .
<https://w3id.org/synapse/nfosi/vocab/Delaware%20State%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Descriptive%20Metadata> skos:definition "Descriptive information about a resource. It is used for discovery and identification. It includes elements such as title, abstract, author, and keywords." ;
skos:note "The `synapse_manifest.csv` files uploaded by DCA count as Descriptive Metadata" .
<https://w3id.org/synapse/nfosi/vocab/Dh5%20alpha> skos:definition "[From GFF:] Dh5 alpha" .
<https://w3id.org/synapse/nfosi/vocab/Dhh-Cre%3B%20NF1Arg681%2A/flox%20Schwann%20Cells> skos:definition "[From GFF:] Dhh-Cre; NF1Arg681*/flox Schwann Cells" .
<https://w3id.org/synapse/nfosi/vocab/Diffuse%20Astrocytoma> skos:definition "DA" ;
linkml:meaning <https://oncotree.mskcc.org/?version=oncotree_latest_stable&field=DA> .
<https://w3id.org/synapse/nfosi/vocab/Diffuse%20Infiltrating%20Neurofibroma> skos:definition "Diffuse infiltrating neurofibroma can present as slow-growing, soft tissue masses with overlying skin thickening. These le-sions infiltrate the dermis and the subcutaneous tissue and characteristically spread along the connective tissues enveloping islands of normal fat. Some of these lesions develop fatty proliferation and can mimic lipomas, angiolipomas, or angiomyolipomas on imaging and histological evaluation " ;
linkml:meaning <https://doi.org/10.1007/s00256-014-1965-8> .
<https://w3id.org/synapse/nfosi/vocab/Disease%20Specific%20Research> skos:definition "Disease Specific Research - Provide detail [DOID] or [MONDO]" .
<https://w3id.org/synapse/nfosi/vocab/Dorsal%20Root%20Ganglion> skos:definition "Ganglion with sensory function within the vertebral column." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C12462> .
<https://w3id.org/synapse/nfosi/vocab/Drexel%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Drop-Seq> dcterms:source <https://github.com/HumanCellAtlas/metadata-schema/blob/master/json_schema/type/process/sequencing/library_preparation_process.json> ;
skos:definition "Drop-Seq library preparation" .
<https://w3id.org/synapse/nfosi/vocab/Drosophila%20melanogaster> skos:definition "Drosophila melanogaster with taxonomy ID: 7227 and Genbank common name: fruit fly" ;
linkml:meaning <https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=7227&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=1&unlock> .
<https://w3id.org/synapse/nfosi/vocab/Duke%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Duquesne%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/ELISA> skos:definition "A highly sensitive technique for detecting and measuring antigens or antibodies in a solution; the solution is run over a surface to which immobilized antibodies specific to the substance have been attached, and if the substance is present, it will bind to the antibody layer, and its presence is verified and visualized with an application of antibodies that have been tagged in some way." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C16553> .
<https://w3id.org/synapse/nfosi/vocab/ELK-TAD%20Luciferase%20Reporter%20HEK293%20Stable> skos:definition "[From GFF:] ELK-TAD Luciferase Reporter HEK293 Stable" .
<https://w3id.org/synapse/nfosi/vocab/ELK-TAD%20Luciferase%20Reporter%20HEK293%20Stable%20NF1%20-/-> skos:definition "[From GFF:] This cell line is in development and not comprehensively characterized. Please contact the investigator for more information. ELK-TAD Luciferase Reporter HEK293 Stable NF1 -/-" .
<https://w3id.org/synapse/nfosi/vocab/ERR%20bisulfite%20sequencing> skos:definition "Enhanced reduced representation bisulfite sequencing (ERRBS) " .
<https://w3id.org/synapse/nfosi/vocab/East%20Carolina%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/East%20Tennessee%20State%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Eastern%20Virginia%20Medical%20School> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/EdU%20proliferation%20assay> dcterms:source <https://www.sigmaaldrich.com/deepweb/assets/sigmaaldrich/product/documents/100/843/17-1052x.pdf> ;
skos:definition "Proliferation assay using EdU as a thymidine nucleoside analog is an alternative to the classical BrdU assay." ;
linkml:meaning <http://purl.obolibrary.org/obo/OBI_0000891> .
<https://w3id.org/synapse/nfosi/vocab/Embryonic%20stem%20cells> skos:definition "Embryonic stem (ES) cells are cells derived from the inner cell mass of the early embryo that can be propagated indefinitely in the primitive undifferentiated state while remaining pluripotent." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C12935> .
<https://w3id.org/synapse/nfosi/vocab/Emory%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/EnVision%202103%20Multiplate%20Reader> skos:definition "EnVision 2103 Multiplate Reader" .
<https://w3id.org/synapse/nfosi/vocab/Ethics%20Approval%20Required> skos:definition "Ethics Approval Required - User prompted to provide IRB/IEC approval" .
<https://w3id.org/synapse/nfosi/vocab/FACE-Q%20Appearance-related%20Distress> skos:definition """This 8-item scale measures appearance-related distress in people seeking cosmetic treatments for the body or the face. Item ask someone to agree/disagree with statements about feelings (e.g., unhappy, stressed, down) and behaviors, such as avoiding being around people.
""" ;
linkml:meaning <https://qportfolio.org/wp-content/uploads/2021/11/FACE-Q-AESTHETICS-USERS-GUIDE.pdf> .
<https://w3id.org/synapse/nfosi/vocab/FACS> skos:definition "" ;
linkml:meaning <https://github.com/HumanCellAtlas/metadata-schema/blob/master/json_schema/type/process/sequencing/library_preparation_process.json> .
<https://w3id.org/synapse/nfosi/vocab/FFPE> skos:definition "Formalin-fixed, paraffin-embedded (FFPE) tissue preservation" .
<https://w3id.org/synapse/nfosi/vocab/FIA-MSMS> skos:definition "Flow injection analysis - tandem mass spectrometer" ;
linkml:meaning <https://www.ncbi.nlm.nih.gov/pubmed/28667829> .
<https://w3id.org/synapse/nfosi/vocab/FLIPR%20high-throughput%20cellular%20screening> dcterms:source <https://www.moleculardevices.com/products/flipr-penta-high-throughput-cellular-screening-system> ;
skos:definition """An imaging-based system that allows measurement and analysis of peaks of human-derived induced pluripotent stem cells (hiPSCs), differentiated into cardiomyocytes and neurons, up to 100 times per second and quickly cherry pick events such as Early-After-Depolarization-like events (EAD-like events), fibrillation, and irregular beating.
""" .
<https://w3id.org/synapse/nfosi/vocab/FPKM> skos:definition "Fragments per kilobase of transcript per miilion reads mapped" .
<https://w3id.org/synapse/nfosi/vocab/FTIR%20spectroscopy> skos:definition """Fourier transform infrared (FTIR) spectroscopy is a technique used to obtain an infrared spectrum of absorption or emission of a solid, liquid or gas. An FTIR spectrometer simultaneously collects high-resolution spectral data over a wide spectral range.
""" ;
linkml:meaning <http://purl.obolibrary.org/obo/CHMO_0000636> .
<https://w3id.org/synapse/nfosi/vocab/FastQC> dcterms:source <https://github.com/s-andrews/FastQC> .
<https://w3id.org/synapse/nfosi/vocab/Fb93.1> skos:definition "Cell line generated by Ray Mattingly's lab." .
<https://w3id.org/synapse/nfosi/vocab/Female> skos:definition "A person who belongs to the sex that normally produces ova. The term is used to indicate biological sex distinctions, or cultural gender role distinctions, or both." ;
linkml:meaning <http://purl.obolibrary.org/obo/NCIT_C16576> .
<https://w3id.org/synapse/nfosi/vocab/Fibromatosis> skos:definition "A poorly circumscribed neoplasm arising from the soft tissues. It is characterized by the presence of spindle-shaped fibroblasts and an infiltrative growth pattern." ;
linkml:meaning <obo:NCIT_C3042> .
<https://w3id.org/synapse/nfosi/vocab/Fibrosarcoma> skos:definition "(FIBS) A malignant mesenchymal fibroblastic neoplasm affecting the soft tissue and bone." ;
linkml:meaning <obo:NCIT_C3043> .
<https://w3id.org/synapse/nfosi/vocab/FirstStranded> skos:definition "Sequences of read 1 align to the RNA strand, regular \"stranded\"." .
<https://w3id.org/synapse/nfosi/vocab/Flash%20frozen> skos:definition "Flash frozen" .
<https://w3id.org/synapse/nfosi/vocab/Florida%20A%26M%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Florida%20Atlantic%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Florida%20Institute%20of%20Technology> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Florida%20International%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Florida%20State%20University> linkml:meaning <https://w3id.org/synapse/nfosi/vocab/> .
<https://w3id.org/synapse/nfosi/vocab/Fluidigm%20C1> skos:definition "" ;
linkml:meaning <https://github.com/HumanCellAtlas/metadata-schema/blob/master/json_schema/type/process/sequencing/library_preparation_process.json> .
<https://w3id.org/synapse/nfosi/vocab/Fluorescence%20In%20Situ%20Hybridization> skos:definition """A physical mapping approach that uses fluorescent tags to detect hybridization of probes within metaphase chromosomes or less condensed somatic interphase chromatin. This technique can be used for identification of chromosomal abnormalities and for gene mapping.