From 192cd6f2c362287f0d9e09aee078a1ce9fb39275 Mon Sep 17 00:00:00 2001
From: Robert Allaway <allaway@users.noreply.github.com>
Date: Fri, 31 Jan 2025 12:14:17 -0600
Subject: [PATCH] Update annotate-nf-processed-data.Rmd

Minor change to make vignette clearer
---
 vignettes/annotate-nf-processed-data.Rmd | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/vignettes/annotate-nf-processed-data.Rmd b/vignettes/annotate-nf-processed-data.Rmd
index c656743..134406b 100644
--- a/vignettes/annotate-nf-processed-data.Rmd
+++ b/vignettes/annotate-nf-processed-data.Rmd
@@ -263,6 +263,8 @@ wf_link <- c(FreeBayes = "https://nf-co.re/sarek/3.2.3/output#freebayes",
              Mutect2 = "https://nf-co.re/sarek/3.2.3/output#gatk-mutect2",
              Strelka2 = "https://nf-co.re/sarek/3.2.3/output#strelka2")
 
+sample_io <- sarek_meta$sample_io
+
 add_activity_batch(sample_io$output_id, 
                    sample_io$workflow, 
                    wf_link[sample_io$workflow],