diff --git a/_pkgdown.yml b/_pkgdown.yml index 8fe504b..72e84df 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -52,12 +52,13 @@ reference: - map_sample_io - map_sample_output_rnaseq - map_sample_output_sarek + - annotate_processed - annotate_aligned_reads - annotate_called_variants - - annotate_expression - - annotate_cnv + - annotate_quantified_expression - annotate_reports_sarek - - annotate_with_tool_stats + - annotate_with_samtools_stats + - processed_meta - nf_workflow_version - title: Dataset Creation and Management @@ -65,12 +66,6 @@ reference: desc: Create datasets in general - contents: - new_dataset -- subtitle: Specialized dataset creation - desc: Create specialized datasets for nextflow processed data, i.e. with some custom construction queries and title templating. -- contents: - - nf_sarek_datasets - - nf_star_salmon_datasets - - nf_cnv_dataset - subtitle: Working with dataset collections to manage datasets after creation - contents: - add_to_collection @@ -156,6 +151,7 @@ reference: - latest_version - walk - copy + - get_path - convert_to_stringlist - bare_syn_id - bad_url