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hw1.txt
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1) Which variants are present in which samples?
SRR2584403_1
1329520 T>G
4141016 C>A
SRR2584404_1
238917 G>T
806308 ATT>AT (T deletion)
1329520 T>G
4141016 C>A
SRR2584405_1
15382 C>T
154497 T>G
254101 T>G
649522 C>T
692265 C>T
692268 A>G
708118 T>C
1176010 T>G
1503866 A>C
1680445 A>T
1680446 A>T
1733754 A>T
1996109 A>T
2000253 A>T
2020126 C>G
2103887 ACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAG > ACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAG (insertion of AGCC repeat)
2296329 A>C
2330469 A>T
2330472 A>T
2416966 C>T
2671373 T>G
2671376 C>A
2682710 G>C
2682764 C>T
3090762 C>A
3090763 T>G
3268057 T>C
3351282 C>T
3509753 T>C
3568506 T>G
3762120 C>A
4029556 G>T
4029559 A>C
4192865 G>A
4497049 T>G
4503866 T>C
4504217 G>A
4504253 G>A
4505396 T>C
4505407 G>A
4506070 A>T
4593578 C>T
SRR2584857_1
920514 T>C
3931002 A>C
4141441 C>T
4202391 T>G
2) Which variants are shared between two or more samples?
1329520 T>G is seen in SRR2584403_1 and SRR2584404_1
4141016 C>A is seen in SRR2584403_1 and SRR2584404_1
920514 T>C is seen in SRR2584405_1 and SRR2584857_1
3931002 A>C is seen in SRR2584405_1 and SRR2584857_1
4141441 C>T is seen in SRR2584405_1 and SRR2584857_1
4202391 T>G is seen in SRR2584405_1 and SRR2584857_1