Merge pull request #224 from nmfs-opensci/eeholmes-patch-1

work on the terminal in rstudio

Dockerfile

@@ -81,6 +81,9 @@ RUN /pyrocket_scripts/fix-home-permissions.sh
 USER ${NB_USER}
 RUN chmod +x ${REPO_DIR}/start \
     && cp ${REPO_DIR}/start /srv/start
+
+# Create a symlink for python to python3 for all users
+RUN ln -s /usr/bin/python3 /usr/local/bin/python
 
 # Revert to default user and home as pwd
 USER ${NB_USER}

scripts/install-rocker.sh

@@ -101,13 +101,5 @@ if command -v tlmgr &> /dev/null; then
     tlmgr install pdfcol tcolorbox eurosym upquote adjustbox titling enumitem ulem soul rsfs
 fi
 
-# Make sure that the default terminal opened in RStudio (which is a login bash) sets the PATH
-current_path="$PATH"
-echo 'if [[ ! -v RSTUDIO || ! -v R_HOME ]]; then \
-    # Set PATH to the captured current_path value \
-    export PATH="'$current_path'"; \
-    echo "Setting PATH to captured value: '$current_path'"; \
-fi' > /etc/profile.d/rstudio_set_path.sh
-
 sudo chown -R jovyan:jovyan /etc/rstudio
 sudo chmod -R u+rwX /etc/rstudio