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[BUG] Platform-specific optional dependencies not being included in package-lock.json when reinstalling with node_modules present #4828

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JustinChristensen opened this issue Apr 29, 2022 · 249 comments
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Bug thing that needs fixing Needs Triage needs review for next steps Release 8.x work is associated with a specific npm 8 release

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@JustinChristensen
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JustinChristensen commented Apr 29, 2022

Is there an existing issue for this?

  • I have searched the existing issues

This issue exists in the latest npm version

  • I am using the latest npm

Current Behavior

[user@host:foo] $ npm -v
8.8.0
[user@host:foo] $ node
Welcome to Node.js v16.14.2.
Type ".help" for more information.
> process.arch
'arm64'

I'm working on a team that utilizes a mix of x64-based and m1-based macs, and has CI build processes that uses musl. We're seeing that npm is skipping platform-specific optional dependencies for packages such as @swc/core as a result of the package-lock.json file being generated without all of them included. In our case, this then causes linting to throw an exception, because one of our eslint plugins depends on @swc, which depends on having the platform specific @swc package also installed.

There seems to be at least two stages of cause to this. Firstly, when installing @swc/core from a clean slate working directory npm generates a package-lock.json with all of the optional dependencies for @swc/core listed:

[user@host:foo] $ npm install @swc/core
[user@host:foo] $ grep 'node_modules/@swc/core-*' package-lock.json
    "node_modules/@swc/core": {
    "node_modules/@swc/core-android-arm-eabi": {
    "node_modules/@swc/core-android-arm64": {
    "node_modules/@swc/core-darwin-arm64": {
    "node_modules/@swc/core-darwin-x64": {
    "node_modules/@swc/core-freebsd-x64": {
    "node_modules/@swc/core-linux-arm-gnueabihf": {
    "node_modules/@swc/core-linux-arm64-gnu": {
    "node_modules/@swc/core-linux-arm64-musl": {
    "node_modules/@swc/core-linux-x64-gnu": {
    "node_modules/@swc/core-linux-x64-musl": {
    "node_modules/@swc/core-win32-arm64-msvc": {
    "node_modules/@swc/core-win32-ia32-msvc": {
    "node_modules/@swc/core-win32-x64-msvc": {

And it only installs the platform specific package:

[user@host:foo] $ ls -l node_modules/@swc/
total 0
drwxr-xr-x  22 user  staff  704 Apr 29 15:39 core
drwxr-xr-x   6 user  staff  192 Apr 29 15:39 core-darwin-arm64

If I then remove my package-lock.json, leave my node_modules directory as-is, and then reinstall, I get:

[user@host:foo] $ rm -rf package-lock.json
[user@host:foo] $ npm install
[user@host:foo] $ grep 'node_modules/@swc/core-*' package-lock.json
    "node_modules/@swc/core": {
    "node_modules/@swc/core-darwin-arm64": {

That is, it then generates a package-lock.json with only the platform-specific dependency that was installed on this machine, and not with the other optional dependencies that should also be listed.

If you delete both node_modules AND package-lock.json, and then re-run npm install, it generates the correct lockfile with all of those optional dependencies listed.

The problem is that then, If the package-lock.json with the missing optional platform-specific dependencies gets checked into git and an x64 user pulls it down, or vice-versa, npm fails to detect that your platform's optional dependencies are missing in the lockfile and just silently skips installing the platform-specific dependency. For example, when I've got a package-lock.json that only contains the x64 @swc package because of the above problem (generated by my coworker on his x64 machine):

[user@host:foo] $ node
Welcome to Node.js v16.14.2.
Type ".help" for more information.
> process.arch
'arm64'
>
[user@host:foo] $ grep 'node_modules/@swc/core-*' package-lock.json
    "node_modules/@swc/core": {
    "node_modules/@swc/core-darwin-x64": {
[user@host:foo] $ ls
package-lock.json package.json

And I then install:

[user@host:foo] $ npm install
added 1 package in 341ms

1 package is looking for funding
  run `npm fund` for details
[user@host:foo] $ ls node_modules/@swc/
core

You can see that it fails to install the arm64 dependency or warn me in any way that the package-lock.json is missing my platform's dependency.

So yeah, two problems:

  1. npm is generating an inconsistent package-lock.json when node_modules has your platform-specific dependency installed.
  2. When installing from this inconsistent package-lock.json, npm fails to try to correct the problem by comparing the optional dependencies to what's listed upstream

Expected Behavior

  1. npm should preserve the full set of platform-specific optional deps for a package like @swc when rebuilding package-lock.json from an existing node_modules tree
  2. npm install should warn if the package-lock.json becomes inconsistent because of the first case

Steps To Reproduce

See above.

Environment

  • npm: 8.8.0
  • Node.js:
  • OS Name: OSX
  • System Model Name: Macbook Pro
[user@host:foo] $ npm -v
8.8.0
[user@host:foo] $ node -v
v16.14.2
[user@host:foo] $ uname -a
Darwin host.foo.com. 21.3.0 Darwin Kernel Version 21.3.0: Wed Jan  5 21:37:58 PST 2022; root:xnu-8019.80.24~20/RELEASE_ARM64_T8101 arm64
[user@host] $ npm config ls
; "user" config from /Users/user/.npmrc
; node bin location = /Users/user/.nvm/versions/node/v16.14.2/bin/node
; node version = v16.14.2
; npm local prefix = /Users/user/Development/foo
; npm version = 8.8.0
; cwd = /Users/user/Development/foo
; HOME = /Users/user
; Run `npm config ls -l` to show all defaults.
@JustinChristensen JustinChristensen added Bug thing that needs fixing Needs Triage needs review for next steps Release 8.x work is associated with a specific npm 8 release labels Apr 29, 2022
@JustinChristensen JustinChristensen changed the title [BUG] Platform-specific optional dependencies not being included in package-lock when reinstalling with node_modules/ present [BUG] Platform-specific optional dependencies not being included in package-lock when reinstalling with node_modules present Apr 29, 2022
@JustinChristensen JustinChristensen changed the title [BUG] Platform-specific optional dependencies not being included in package-lock when reinstalling with node_modules present [BUG] Platform-specific optional dependencies not being included in package-lock.json when reinstalling with node_modules present Apr 29, 2022
@JustinChristensen
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@nlf

Sorry to ping you out of the blue, but this issue has been open for 11 days now without any movement. Is there anyone working on npm right now that might have the bandwidth to at least validate that this is indeed a problem as I've described it?

Just so that when someone does become available to do some development work they know that this is in the queue?

Please and thank you.

@JustinChristensen
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Bump

@RobbieClarken
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I'm also encountering this issue with a Next.js project:

  • Deleting package-lock.json and running npm install on an M1 Mac results in a package-lock.json file that is no longer able to build the app on x86.
  • This can be fixed by deleting package-lock.json and node_modules and re-running npm install.

Unfortunately developers often don't realise the package-lock.json file is broken because everything continues to run fine on their machine. It is only when the build runs in CI that we learn it is broken.

Here is a reproduction:

$ node --version
v16.13.0
$ npm --version
8.12.1
$ npx create-next-app@latest
What is your project named? … my-app
Creating a new Next.js app in /Users/robbie/demo/my-app.
$ cd my-app/
$ npm install

up to date, audited 223 packages in 480ms

68 packages are looking for funding
  run `npm fund` for details

found 0 vulnerabilities
$ git status
On branch main
nothing to commit, working tree clean
$ rm package-lock.json
$ npm install

up to date, audited 223 packages in 579ms

68 packages are looking for funding
  run `npm fund` for details

found 0 vulnerabilities
$ # ************ package-lock.json is now incompatible with x86 ************
$ git diff
diff --git a/package-lock.json b/package-lock.json
index cbbf946..a87c1e5 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -96,36 +96,6 @@
         "glob": "7.1.7"
       }
     },
-    "node_modules/@next/swc-android-arm-eabi": {
-      "version": "12.1.6",
-      "resolved": "https://registry.npmjs.org/@next/swc-android-arm-eabi/-/swc-android-arm-eabi-12.1.6.tgz",
-      "integrity": "sha512-BxBr3QAAAXWgk/K7EedvzxJr2dE014mghBSA9iOEAv0bMgF+MRq4PoASjuHi15M2zfowpcRG8XQhMFtxftCleQ==",
-      "cpu": [
-        "arm"
-      ],
-      "optional": true,
-      "os": [
-        "android"
-      ],
-      "engines": {
-        "node": ">= 10"
-      }
-    },
-    "node_modules/@next/swc-android-arm64": {
-      "version": "12.1.6",
-      "resolved": "https://registry.npmjs.org/@next/swc-android-arm64/-/swc-android-arm64-12.1.6.tgz",
-      "integrity": "sha512-EboEk3ROYY7U6WA2RrMt/cXXMokUTXXfnxe2+CU+DOahvbrO8QSWhlBl9I9ZbFzJx28AGB9Yo3oQHCvph/4Lew==",
-      "cpu": [
-        "arm64"
-      ],
-      "optional": true,
-      "os": [
-        "android"
-      ],
-      "engines": {
-        "node": ">= 10"
-      }
-    },
[...]
$ rm -r package-lock.json node_modules
$ npm install

added 222 packages, and audited 223 packages in 2s

68 packages are looking for funding
  run `npm fund` for details

found 0 vulnerabilities
$ # ************ package-lock.json is now ok again ************
$ git status
On branch main
nothing to commit, working tree clean

@pete55104
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I am also having this issue. I'm trying to run tests using jest with swc. The test runner is a linux image, but my dev machine is darwin. I can get it to work by either using --force to install the linux dependency, or I can install packages from inside the container... but github CI stands up the docker container in such a way that I can't easily install packages from in there, and that also prevents me from maintaining a cached node modules etc.

@johnculviner
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bump

@nikkhn
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nikkhn commented Jul 12, 2022

bump - cannot get optional dependencies (namely @swc/core-linux-arm64-gnu) to install on my linux distro

@sgoodluck
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@alcuadrado
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Confirming that this issue is still present. It's particularly important for projects using NAPI modules, as tons of them use platform-specific packages.

jfsoul added a commit to guardian/prosemirror-typerighter that referenced this issue Sep 26, 2022
@AboldUSER
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Ran into this issue when creating a CI process for a repo where I use a Windows machine and the CI process is using Linux. My quick "fix" for now is to start the CI process by deleting the package-lock.json and running npm install instead of npm ci. I know this is not good practice, so looking forward to a real fix to come through.

@eliotSmithNYC
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@douglassllc
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I am having a similar issue. My project uses @ffmpeg-installer/ffmpeg. While using npm v6 all optional dependencies (arch specific) are installed. After my upgrade to npm v8 the optional dependencies no longer install. Per the npm documentation I attempted using --include=optional, but this did not resolve the issue.

What has changed between v6 and v8 and is there an npm config option that will have v8 work similar to v6 when it comes to optional dependencies?

tobias-jarvelov added a commit to mullvad/mullvadvpn-app that referenced this issue Feb 25, 2025
There is a known bug with npm where optional
dependencies aren't installed correctly, see:

- npm/cli#4828
- rollup/rollup#5267
- vitejs/vite#15120

In order to resolve this we have to explicitly
list the optional dependencies in our own
package.json for them to be resolved and
installed correctly.
MarkusPettersson98 pushed a commit to mullvad/mullvadvpn-app that referenced this issue Feb 25, 2025
There is a known bug with npm where optional
dependencies aren't installed correctly, see:

- npm/cli#4828
- rollup/rollup#5267
- vitejs/vite#15120

In order to resolve this we have to explicitly
list the optional dependencies in our own
package.json for them to be resolved and
installed correctly.
paulrutter added a commit to paulrutter/cli that referenced this issue Feb 25, 2025
- fix tests by adjusting snapshots for reify, now that it doesn't trash optional dependencies that fail due to a platform mismatch
- fix tests for isolated-mode by adjusting the assertions to not expect failure, but expect an empty directory though in case of a platform mismatch
paulrutter added a commit to paulrutter/cli that referenced this issue Feb 25, 2025
- Remove unneeded code in build-ideal-tree, as it currently doesn't seem to ever hit this code
- Without this, the original issue is still fixed
wolfy1339 added a commit to probot/probot that referenced this issue Feb 25, 2025
* feat!: Full ESM

This makes Probot entirely esm-only.

* Update various dependencies to their latest, ESM-only versions

This updates pkg-conf at runtime, and get-port and execa in development

* Run the linter

* Update `@probot/octokit-plugin-config`

* Update `@probot/octokit-plugin-config` again

* fix: update octokit deps

* fix: adapt for latest version of aggreagate-error

* test: adapt for latest @octokit/webhooks

* build: lockfile update

* style: prettier

* chore: bump `@probot/get-private-key` and `octokit-auth-probot`

* chore(deps): use fetch-mock v10

* chore(deps): pkg-conf renamed to package-config

* fix: define the `require()` function

* style: prettier

* build: lockfile update

* Bump to stable @probot/get-private-key

* build: downgrade `fetch-mock`

This avoids a breaking change in 10.1

* build: package-lock update

npm/cli#4828

* build: package-lock update

npm/cli#4828

* fix: use import-meta-resolve to resolve the app functions

* build(deps): unlock fetch-mock dependency

* build: publish package to JSR (#2098)

* fix(types): add explicit return types

* build: publish package to JSR

* style: prettier

* build: update lockfile

* style: lint

* fix(build): split global type augmentation from module exports

* build: package lock update

* ci: run release for full-esm branch

* build: fix release config

* build: fix release config

* style: prettier

* build: update snapshots

* Empty commit to triggerr release

BREAKING CHANGE: Probot is now a fully ESM native library

* replace lru-cache with toad-cache (#2108)

* replace lru-cache with toad-cache

* fix lint

* update deps in package-lock

* update deps in package-lock

* probot14: Remove commander (#2132)

* chore: remove commander

* some more

* better

* dont throw

* remove last elements of commander

* fix

* chore: optimize static files (#2134)

* upgrade to probot pino v4

* build: package lock update

---------

Co-authored-by: wolfy1339 <webmaster@wolfy1339.com>
Co-authored-by: wolfy1339 <4595477+wolfy1339@users.noreply.github.com>
Co-authored-by: Aras Abbasi <aras.abbasi@googlemail.com>
kristiandupont added a commit to kristiandupont/mdconf that referenced this issue Mar 2, 2025
ReflectiveChimp added a commit to beefyfinance/beefy-v2 that referenced this issue Mar 4, 2025
ReflectiveChimp added a commit to beefyfinance/beefy-v2 that referenced this issue Mar 4, 2025
FyreByrd added a commit to sillsdev/appbuilder-portal that referenced this issue Mar 4, 2025
@leevayy
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leevayy commented Mar 5, 2025

bump

1 similar comment
@dmytro-kachurynets
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bump

@paulrutter
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There is a PR already, please do not spam this thread any further and await feedback on the PR instead. Thanks!

#8127

FyreByrd added a commit to sillsdev/appbuilder-portal that referenced this issue Mar 5, 2025
mengxin10824 added a commit to mengxin10824/Ghost that referenced this issue Mar 6, 2025
@broomfn
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broomfn commented Mar 7, 2025

+1 Any workarounds?

aduth added a commit to aduth/conjugate.training that referenced this issue Mar 7, 2025
FyreByrd added a commit to sillsdev/appbuilder-portal that referenced this issue Mar 7, 2025
* Trivial changes from migration

* Fix imports

* Handle migration-tasks

* Remove all svelte/legacy

* Migrate some components/pages that failed earlier

* Upgrade some packages

This was done to ensure that all our dependencies work with Svelte 5.
svelte-flatpickr has a broken peer dependency, but appears to otherwise work.

Note: TailwindCSS and DaisyUI have new major versions in about a month.

* Use BullMQAdapter

BullMQAdapter is in fact the correct adapter since we are using bullmq, not bull

This was to solve an issue that may have been introduced by upgrading all the dependencies.

* Use snippets for Pagination component

* Replace writable with $state

* Remove erroneous $state()

* Add peer-dependency override for svelte-flatpickr

* Fix package-lock for platform-specific deps

This bug cause the issue: npm/cli#4828

* Fix infinite loop bug in SortTable

This was not an issue before Svelte 5. My assumption is that it has something to do with how Svelte 5 uses Proxies for deep reactivity.

* Fix styling on LanguageCodeTypeahead

* Fix pagination for Svelte 5

* Fix infinite loop bug for user invite

* Change user invite button style
@MarioWassmer
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MarioWassmer commented Mar 11, 2025

Just a small heads up from us:
In our specific case this dependency conflict was caused by rollup used in the vite bundler. We just updated to the latest version (4.35) and the conflict was gone

vbfox added a commit to waldoapp/wdio-service that referenced this issue Mar 11, 2025
Seem like we were affected by a npm cli bug: npm/cli#4828
@andrew-scott-fischer
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+1 Any workarounds?

@broomfn did you even read the issue?

  1. delete package-lock.json
  2. delete node_modules
  3. run npm install
  4. ???
  5. profit

@broomfn
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broomfn commented Mar 11, 2025

+1 Any workarounds?

@broomfn did you even read the issue?

  1. delete package-lock.json
  2. delete node_modules
  3. run npm install
  4. ???
  5. profit

Yes I did, tried it several times with no joy, but my issue was slightly different than the one reported here, my npm config had the os set to Linux, so wasn't picking up the correct rollup package for the right os producing the same error message as in this ticket.

ShellWen added a commit to ookamitai/direwolf-lab that referenced this issue Mar 12, 2025
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