From 6bf02635372fb15ef8b0a70d97bdb463e014e33a Mon Sep 17 00:00:00 2001 From: Ray Stefancsik Date: Mon, 24 Feb 2025 15:06:54 +0000 Subject: [PATCH 1/2] Add new term "amount of iron in brain" Addresses https://github.com/EBISPOT/efo/issues/2347 --- src/patterns/data/default/entity_attribute_location.tsv | 1 + 1 file changed, 1 insertion(+) diff --git a/src/patterns/data/default/entity_attribute_location.tsv b/src/patterns/data/default/entity_attribute_location.tsv index 5fb44ce2..44d075b6 100644 --- a/src/patterns/data/default/entity_attribute_location.tsv +++ b/src/patterns/data/default/entity_attribute_location.tsv @@ -8053,3 +8053,4 @@ OBA:2052958 PR:O75356 PATO:0000070 amount UBERON:0000178 blood PMID:3841286 OBA:2052959 PR:P51531 PATO:0000070 amount UBERON:0000178 blood PMID:38412862 https://orcid.org/0000-0001-6757-4744 OBA:2052960 PR:P00441 PATO:0000070 amount UBERON:0000178 blood PMID:38412862 https://orcid.org/0000-0001-6757-4744 OBA:VT0005007 bone mineral amount CHEBI:46662 mineral PATO:0000070 amount UBERON:0001474 bone element bone mineral mass https://orcid.org/0000-0001-8314-2140 +OBA:2045560 amount of iron in brain CHEBI:18248 iron atom PATO:0000070 amount UBERON:0000955 brain brain iron amount PMID:38789058 https://orcid.org/0000-0001-8314-2140 From 68e2ee752f5b3e3a0e915423a22bd4e7481e7b26 Mon Sep 17 00:00:00 2001 From: rays22 Date: Mon, 24 Feb 2025 15:21:17 +0000 Subject: [PATCH 2/2] Update dosdp patterns file --- src/patterns/definitions.owl | 15 +++++++++++++-- 1 file changed, 13 insertions(+), 2 deletions(-) diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index 1fce7e6e..208ade05 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2025-02-12") + +Annotation(owl:versionInfo "2025-02-24") Declaration(Class()) Declaration(Class()) @@ -12263,6 +12263,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -109487,6 +109488,16 @@ AnnotationAssertion(Annotation( "bone density") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (amount of iron in brain) + +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location") "The amount of a iron atom when measured in brain.") +AnnotationAssertion( "https://orcid.org/0000-0001-8314-2140") +AnnotationAssertion( "PMID:38789058") +AnnotationAssertion( "brain iron amount") +AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute_location") "brain iron atom amount") +AnnotationAssertion(rdfs:label "amount of iron in brain") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) + # Class: (ascending aorta diameter) AnnotationAssertion(Annotation( "AUTO:patterns/patterns/entity_attribute") "The diameter of a ascending aorta.")