NEWS

Changes in version 1.5.3 (2023-11-21)
+ Added 'seed' parameter to simulation 

Changes in version 1.5.2 (2023-11-08)
+ Updated SimBu to be compatibel with Seurat v5

Changes in version 1.1.2 (2023-01-12)
+ Bugfix in the dataset_seurat function, where custom names for the parameters `cell_id_col` and `cell_type_col` did not work (thanks to @orange-whale for bringing this up)
+ Changed default `remove_bias_in_counts` parameter of function `simulate_bulk` to FALSE after discussion with @ZheFrench

Changes in version 1.1.1 (2022-11-02)
+ Bugfix in mirror_db scenario, where cell type fractions were not correctly annotated in the cell_fraction output (thanks to @arielah for helping out here)

Changes in version 1.0.0 (2022-11-01)
+ SimBu was released on Bioconductor 3.16

Changes in version 0.99.10 (2022-07-07)
+ Added long tests to test the download of sfaira datasets

Changes in version 0.99.7 (2022-06-01)
+ Added functionality to check Sfaira datasets for accessibility (if the specified URLs can be downloaded)
+ Added list of Sfaira IDs, which are currently not downloadable

Changes in version 0.99.0 (2022-04-21)
+ Use `basilisk` to solve conda environment and Sfaira dependencies
+ SimBu has been submitted to Bioconductor

Changes in version 0.1.0 (2021-05-15)
+ Project start