Error running deconvolute_cibersort_custom()

[kevin198930]

Hello,

I am trying to run immundedeconv::deconvolute_cibersort_custom() using my gene expression matrix and signature matrix. I am using immunedeconv v2.1.0 and the Cibersort source code v1.04 provided in Issue #168. The code I used is as follows:

library(immunedeconv)
set_cibersort_binary("~/Cibersort_source_code/CIBERSORT_v1_04_update.R")

results <- immunedeconv::deconvolute_cibersort_custom(
gene_expression_matrix = gene_expression_matrix,
signature_matrix = signature_matrix,
QN = FALSE,
absolute = TRUE,
abs_method = "sig.score")

The error I get is:

Error in out[[t]]$coefs : $ operator is invalid for atomic vectors
In addition: Warning message:
In mclapply(1:svn_itor, res, mc.cores = svn_itor) :
all scheduled cores encountered errors in user code

I'm not sure what this error is showing and any help resolving this would be greatly appreciated!