Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Remove phenotypes from Uniprot-OMIM linkset #12

Open
stain opened this issue Oct 12, 2015 · 1 comment
Open

Remove phenotypes from Uniprot-OMIM linkset #12

stain opened this issue Oct 12, 2015 · 1 comment
Milestone
2.1

Comments

@stain
Copy link
Contributor

stain commented Oct 12, 2015

The linkset seems to contain both genes and phenotypes! I don't think mappings of proteins to phenotypes belong to the IMS.

Linkset http://data.openphacts.org/dev/ims/linksets/uniprot/uniprot_omim.ttl.gz
@stain stain mentioned this issue Oct 12, 2015
Open
@stain stain added this to the 2.1 milestone Oct 12, 2015
@Chris-Evelo
Copy link

Agree, it doesn't belong in the IMS. But it does belong in the cache. It might be there already from the OMIM data. This could then be comparable to the ENSEMBL -> UniProt, UniProt -> ENSEML issues only for the cache and not for the IMS. It calls for an approach where we may have to choose the preferred resource for every relationship between two resources.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
2.1
Development

No branches or pull requests
2 participants
@stain @Chris-Evelo