Repositories list

• .github

  Public
  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

• ome-zarr-fiji-java

  Public
  A drag-and-drop gateway of OME-Zarrs into Fiji.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• ngff-transformations

  Public
  Python

  •

  MIT License

  •0•4•1•0•Updated Nov 23, 2024Nov 23, 2024

• zarr-chunk-benchmarking

  Public
  2024 OME-Zarr Hackathon project for benchmarking read performance of chunk sizing on different storage environments

  Python

  •0•2•0•0•Updated Nov 22, 2024Nov 22, 2024

• single-file-ome-ngff

  Public
  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Nov 21, 2024Nov 21, 2024

• ome-zarr-parallel-write

  Public
  ome-zarr-parallel-write outcome @ OME-NGFF workflow hackathon

  0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• ome-zarr-image-analysis-nextflow

  Public
  Basic example of using OME-Zarr in a Nextflow pipeline

  Jupyter Notebook

  •

  MIT License

  •2•15•7•0•Updated Nov 16, 2024Nov 16, 2024

• containers

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•3•1•0•Updated Sep 26, 2024Sep 26, 2024

• test-datasets

  Public
  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Apr 2, 2024Apr 2, 2024

• nextflow-modules

  Public
  nf-core-compatible modules for Nextflow

  Nextflow

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•2•0•Updated Jan 17, 2024Jan 17, 2024

• baysor-nextflow-module

  Public
  Nextflow module to use Baysor for cell segmentation in imaging-based Spatial Transcriptomics

  Python

  •

  MIT License

  •0•2•0•0•Updated Dec 1, 2023Dec 1, 2023

• ome-zarr-examples

  Public
  Collection of ome-zarr structures, for testing different NGFF validators

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•2•0•Updated Nov 10, 2023Nov 10, 2023