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@CNIC-Proteomics Proteomics at the Spanish National Center of Cardiovascular Research

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    54 repositories

    • SearchToolkit

      Public
      Python
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • bioDataHub

      Public
      Scripts that create databases used by iSanXoT
      Python
      •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • TurboOmics

      Public
      Web-based platform for multi-omics analysis of metabolomics data implemented in TurboPutative
      JavaScript
      •
      Other
      •1•1•0•0•Updated Jan 21, 2025Jan 21, 2025

    • TurboPutative-web

      Public
      metabolomicslc-msdata-processinguntargeted-metabolomics
      HTML
      •
      Other
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • iSanXoT

      Public
      Stand-alone application that executes workflows for quantitative high-throughput proteomics, systems biology and the statistical analysis, integration and comparison of experiments, based on SanXoT integrations.
      workflowproteomics
      Python
      •
      Other
      •1•2•0•1•Updated Jan 15, 2025Jan 15, 2025

    • nf-SearchEngine

      Public
      nf-SearchEngine is a Nextflow pipeline that executes the MSFragger search engine for the peptide identification.
      Groovy
      •
      Other
      •0•1•0•0•Updated Jan 10, 2025Jan 10, 2025

    • nf-PTM-compass

      Public
      nf-PTM-compass is a Nextflow pipeline that enhances the identification and quantification of Post-Translational Modifications (PTMs).
      Groovy
      •
      Other
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • nf-modules

      Public
      Modules for nextflow pipelines
      Nextflow
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • PTM-compass

      Public
      PTM-compass workflow
      Python
      •
      Other
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • next-Launcher-app

      Public
      Web application for the next-Launcher system
      CSS
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • next-Launcher

      Public
      next-Laucher is a system that execute Nextflow pipelines: backend and frontend systems
      Dockerfile
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • nextflow-api

      Public
      Nextflow-API is a web application and REST API for submitting and monitoring Nextflow pipelines on a variety of execution environments.
      Python
      •
      MIT License
      •0•2•0•0•Updated Dec 17, 2024Dec 17, 2024

    • nf-test

      Public
      Nextflow pipeline for testing
      Groovy
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • ReportAnalysis

      Public
      Scripts for Report Analysis
      JavaScript
      •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • pyVseq

      Public
      Vseq rebuilt in Python
      Python
      •
      Other
      •1•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • ReFrag

      Public
      Recom rebuilt for MSFragger
      Python
      •
      Other
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • TrackHubs

      Public
      Python
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • Solvers-PTMap

      Public
      Python
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • SHIFTS

      Public
      SHIFTS is a battery of programs for high-throughput PTM (Post Translational Modifications) processing. SHIFTS identifies peaks in the Delta Mass distribution, assigns PSMs to peaks, and calculates FDR for peptide identification.
      Python
      •3•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • fetchCMM

      Public
      JavaScript
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • SANPRO

      Public
      The programs for the iSanXoT results
      Python
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • Multiomics-pipeline

      Public
      Set of Jupyter Notebooks, scripts and libraries to perform the multiomics integration.
      Jupyter Notebook
      •0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • sanREST

      Public
      A RESTful API that describes the web services and the operations for the report files of iSanXoT.
      CSS
      •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • TurboPutative-2

      Public
      C++
      •
      Other
      •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • DBCleaner

      Public
      Python
      •0•0•0•0•Updated Dec 12, 2022Dec 12, 2022

    • ReCom

      Public
      Branch of Comet MS/MS
      C
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 1, 2022Dec 1, 2022

    • MiCoDIS

      Public
      JavaScript
      •0•0•0•0•Updated Sep 9, 2022Sep 9, 2022

    • PAnTeomics

      Public
      Peptidoform Annotation Tool for proteomic analysis
      Python
      •0•0•0•0•Updated Jul 20, 2022Jul 20, 2022

    • corrNetwork

      Public
      Python
      •0•0•0•0•Updated Jun 17, 2022Jun 17, 2022

    • ReportStats-iSanXoT

      Public
      Application to calculate statistics on iSanXoT report
      JavaScript
      •0•0•0•0•Updated Mar 22, 2022Mar 22, 2022