Dean Lab

All

15 repositories

navigate
Public
navigate - open source light-sheet microscope controls
microscopy light-sheet light-sheet-microcopy lightsheet
Python
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Other
•9•34•36•2•Updated Mar 29, 2025Mar 29, 2025
COMPASS
Public
Jupyter Notebook
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Other
•0•0•1•0•Updated Mar 23, 2025Mar 23, 2025
clearex
Public
Python
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Other
•0•0•0•0•Updated Mar 20, 2025Mar 20, 2025
navigate-at-scale
Public
A navigate plugin for high-throughput microscopy.
C
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MIT License
•1•0•4•0•Updated Mar 19, 2025Mar 19, 2025
CI2023
Public
Introduction to Python Software Development on GitHub
14•5•0•2•Updated Mar 6, 2025Mar 6, 2025
navigate-plugin-template
Public template
A forkable template for navigate plugins.
plugin light-sheet-microscopy
Python
•
MIT License
•2•0•0•0•Updated Feb 8, 2025Feb 8, 2025
Intro-to-Python-2024
Public
Jupyter Notebook
•1•2•0•0•Updated Oct 31, 2024Oct 31, 2024
navigate-photoactivation
Public
A plugin that enables event-driven photoactivation routines with navigate.
Python
•
MIT License
•0•0•0•0•Updated Sep 20, 2024Sep 20, 2024
navigate-constant-velocity-acquisition
Public
A navigate plugin for constant velocity imaging.
Python
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MIT License
•0•0•1•0•Updated Aug 30, 2024Aug 30, 2024
navigate-confocal-projection
Public
Confocal Projection Plugin
Python
•
MIT License
•1•0•0•0•Updated Aug 30, 2024Aug 30, 2024
navigate-mmcore-plugin
Public
A plugin for seamless integration of Micro-Manager devices with navigate, enhancing light-sheet microscopy control.
microscopy light-sheet-microscopy
Python
•
MIT License
•1•0•0•0•Updated Aug 12, 2024Aug 12, 2024
thedeanlab.github.io
Public
JavaScript
•0•0•0•0•Updated May 10, 2024May 10, 2024
navigate-ilastik-server
Public
Ilastik as a server for communication with the ASLM software.
Python
•0•0•0•0•Updated Apr 5, 2024Apr 5, 2024
.github
Public
The Dean Lab at The University of Texas Southwestern Medical Center
0•0•0•0•Updated Nov 12, 2023Nov 12, 2023
GMIC
Public
Shell
•0•0•0•0•Updated Feb 22, 2023Feb 22, 2023