Repositories list

• Mentorship_Program

  Public
  4•0•0•1•Updated Jan 13, 2024Jan 13, 2024

• Bioinformatics-Unit-Training

  Public
  Contains annual training schedules

  3•1•4•0•Updated Jan 13, 2024Jan 13, 2024

• hpc-modules

  Public
  Module installation and usage notes for icipe hpc.

  Roff

  •5•1•0•0•Updated Jun 21, 2023Jun 21, 2023

• GenomeAnnotationHackathon

  Public
  2•0•0•0•Updated Jun 21, 2023Jun 21, 2023

• MachineLearning4Genomics

  Public
  Machine Learning for Genomics Course.

  genomicspythondata-science+ 2machine-learningjupyter-notebooks

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •39•8•0•0•Updated Feb 15, 2023Feb 15, 2023

• Reviewing-16s-Analysis-Workflows

  Public
  R

  •4•0•2•0•Updated Feb 14, 2023Feb 14, 2023

• 16S_Accreditation

  Public
  Repo Containing the Scripts, results, and report from the Accreditation Exercise by icipe H3ABioNet node.

  HTML

  •9•4•2•0•Updated Feb 13, 2023Feb 13, 2023

• hpc-environment-modules

  Public
  Roff

  •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

• bioinformatics_incubation_data

  Public
  R

  •0•0•0•0•Updated Jan 31, 2023Jan 31, 2023

• mbbu.github.io

  Public
  HTML

  •

  MIT License

  •2•0•0•0•Updated Jan 25, 2023Jan 25, 2023

• Plasmodium_falciparum

  Public
  Reproducing methods from "Genomic analysis reveals independent evolution of Plasmodium falciparum populations in Ethiopia" Repo contains scripts, results, and report.

  HTML

  •2•0•0•0•Updated Jan 16, 2023Jan 16, 2023

• training-materials-and-resources

  Public
  Materials used to train students, interns and new staff

  1•0•6•0•Updated Jan 11, 2023Jan 11, 2023

• Journal_Club

  Public
  Creative Commons Zero v1.0 Universal

  •34•0•0•0•Updated Dec 1, 2022Dec 1, 2022

• ARPPIS_Bioinfo

  Public
  0•0•0•0•Updated Nov 11, 2022Nov 11, 2022

• Compute-environment

  Public
  JavaScript

  •1•0•0•0•Updated Jul 20, 2022Jul 20, 2022

• MyFirstFork

  Public
  Fork this repository and make changes to the README

  104•0•0•0•Updated Jul 12, 2022Jul 12, 2022

• arbopan

  Public
  A pangenomics pipeline tailored for arboviruses.

  Nextflow

  •0•0•0•0•Updated Jun 28, 2022Jun 28, 2022

• hpc_site

  Public
  A repo for hosting Bioinformatics Server at ICIPE

  0•0•1•0•Updated Jun 20, 2022Jun 20, 2022

• Galaxy-training-workshop

  Public
  0•0•0•0•Updated Jun 16, 2022Jun 16, 2022

• call_for_Bioinfo_Internship_Cohort6

  Public
  0•1•0•0•Updated Jun 6, 2022Jun 6, 2022

• Seminar_Presentations

  Public
  9•0•0•3•Updated Jun 6, 2022Jun 6, 2022

• Tutorials-software-guide

  Public
  Contains guide on how to run graphical software's, Pipelines and tutorials on sample use cases of analysis on the cluster.

  5•0•0•0•Updated Feb 3, 2022Feb 3, 2022

• User_management_Hpc_cluster

  Public
  how to add a list of user to the cluster

  Shell

  •0•0•0•0•Updated Feb 3, 2022Feb 3, 2022

• Icipe-hpc-environment

  Public
  This repo contains Environment Modules used in Icipe's research computing infrastructure.

  Roff

  •5•0•0•0•Updated Feb 3, 2022Feb 3, 2022

• Onboarding

  Public
  This repository contains the onboarding resources and readings that are recommended for when you join the Bioinformatics team at MBBU

  5•1•1•0•Updated Feb 3, 2022Feb 3, 2022

• call_for_Bioinfo_internship_cohort5

  Public
  The Bioinformatics internship program at icipe seeks to attract highly motivated graduates for a four-month internship and mentorship program.

  1•0•0•0•Updated Jan 8, 2022Jan 8, 2022

• intbt_2019

  Public
  For sharing resource and tutorials from the int-bt H3ABioNet training

  R

  •11•1•4•0•Updated Nov 12, 2021Nov 12, 2021

• ml-basics

  Public
  Exercise notebooks for Machine Learning modules on Microsoft Learn

  Jupyter Notebook

  •

  MIT License

  •2.3k•0•0•0•Updated Sep 14, 2021Sep 14, 2021

• call_for_Bioinfo_internship_cohort4

  Public
  0•1•0•0•Updated Sep 3, 2021Sep 3, 2021

• 16S-mini-project

  Public
  This is a workflow for 16S rRNA analysis.

  metadataqiime2usearch+ 1qiime2-environment

  Shell

  •

  MIT License

  •6•3•0•0•Updated Aug 30, 2021Aug 30, 2021