Repositories list

• mixcr-library-builder

  Public
  MiXCR reference library builder

  Vue

  •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• differential-expression

  Public
  Differential Expression Block

  Vue

  •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• graph-maker

  Public
  Graph Maker Block

  TypeScript

  •0•1•0•0•Updated Feb 28, 2025Feb 28, 2025

• mixcr-clonotyping

  Public
  MiXCR Clonotyping Block

  tcr-repertoirebcr-repertoiremixcr+ 3repertoire-sequencingbcr-seqtcr-seq

  TypeScript

  •0•2•0•3•Updated Feb 28, 2025Feb 28, 2025

• cell-ranger

  Public
  Cell Ranger Block

  TypeScript

  •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• star-read-mapping

  Public
  STAR Read Mapper Block

  Vue

  •0•1•0•1•Updated Feb 28, 2025Feb 28, 2025

• batch-correction

  Public
  Batch Correction Block

  0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• samples-and-data

  Public
  Samples & Data Block

  Vue

  •1•5•0•0•Updated Feb 27, 2025Feb 27, 2025

• functional-analysis

  Public
  Functional Analysis Block

  R

  •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• repertoire-gene-usage

  Public
  Vue

  •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• gene-browser

  Public
  Gene Browser Block

  TypeScript

  •0•0•0•1•Updated Feb 25, 2025Feb 25, 2025

• repertoire-distance

  Public
  Repertoire distance

  Vue

  •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• repertoire-diversity

  Public
  Repertoire Diversity Analysis

  Vue

  •0•0•0•1•Updated Feb 22, 2025Feb 22, 2025

• clonotype-browser

  Public
  Clonotype Browser Block

  TypeScript

  •0•4•0•1•Updated Feb 20, 2025Feb 20, 2025

• fastqc

  Public
  Runs FastQC on a dataset loaded by "Samples & Data"

  Vue

  •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

• software-ptransform

  Public
  Python script used inside Platforma Workflow SDK to aggregate PFrame data

  Python

  •0•0•0•1•Updated Feb 19, 2025Feb 19, 2025

• dimensionality-reduction

  Public
  Dimensionality Reduction Block

  TypeScript

  •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

• mixcr-shm-trees

  Public
  MiXCR Somatic hypermutation (SHM) Trees Block

  bcr-seqsomatic-hypermutations

  Vue

  •0•3•0•1•Updated Feb 14, 2025Feb 14, 2025

• software-fastqc

  Public
  FASTQC software packed for Platforma Backend

  JavaScript

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• assets-genome-cellranger

  Public
  Genome Assets for CellRanger

  Shell

  •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

• software-cellranger

  Public
  CellRanger packed for Platforma Backend

  Shell

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• table

  Public
  Generic Table Block

  Vue

  •0•0•0•0•Updated Jan 11, 2025Jan 11, 2025

• blast

  Public
  BLAST Platforma block

  Vue

  •0•0•0•2•Updated Jan 10, 2025Jan 10, 2025

• assets-genome

  Public
  Genome Assets

  Shell

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• makeblastdb

  Public
  Build a BLAST database with your (local) sequences

  TypeScript

  •0•1•0•1•Updated Nov 29, 2024Nov 29, 2024

• java-debug

  Public
  Tiny dev block that helps with debugging of PL Java runtime

  TypeScript

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• runenv-java-corretto

  Public
  Amazon Corretto JAVA distribution package for Platforma Backend (run environment)

  Shell

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• software-blast

  Public
  Blast software packaed for Platforma

  Shell

  •0•3•0•0•Updated Oct 18, 2024Oct 18, 2024