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    82 repositories

    • ramdaq

      Public
      Nextflow
      •
      MIT License
      •3•13•4•0•Updated Feb 19, 2025Feb 19, 2025

    • mesh-workflow

      Public
      Python
      •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • pubmed-workflow

      Public
      Python
      •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • lrbase-workflow

      Public
      Selection procedure of species used in LRBase.XXX.eg.db
      R
      •1•2•0•0•Updated Feb 6, 2025Feb 6, 2025

    • AHMeSHDbs

      Public
      Supplies AnnotationHub with MeSHDb NIH MeSH annotation databases for many species.
      R
      •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • AHLRBaseDbs

      Public
      Supplies AnnotationHub with LRbaseDb Ligand-Receptor annotation databases for many species.
      R
      •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • AHPubMedDbs

      Public
      R
      •1•1•0•0•Updated Feb 6, 2025Feb 6, 2025

    • GenPerturb

      Public
      This repository hosts the code and tools developed for benchmarking transfer learning in genomic DNA models.
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 22, 2024Dec 22, 2024

    • self_incomp

      Public
      sakigake self-incomp
      R
      •0•1•0•0•Updated Oct 13, 2024Oct 13, 2024

    • DelayedTensor

      Public
      R package for sparse and out-of-core arithmetic and decomposition of Tensor
      R
      •0•4•0•0•Updated Sep 23, 2024Sep 23, 2024

    • SparseArray-experiments

      Public
      Benchmark of some sparse array formats
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • WormTensor

      Public
      R package for a Clustering Method for Time-Series Whole-Brain Activity Data of C. elegans
      R
      •
      Other
      •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • TestNotebooks

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • nnTensor

      Public
      R package for Non-negative Tensor Decomposition
      R
      •
      Other
      •5•16•0•0•Updated May 13, 2024May 13, 2024

    • dcTensor

      Public
      R package for Discrete Matrix/Tensor Decomposition
      R
      •
      Other
      •0•3•0•0•Updated May 12, 2024May 12, 2024

    • LRBaseDbi

      Public
      DBI to construct LRBase-related package
      R
      •0•3•0•0•Updated Mar 5, 2024Mar 5, 2024

    • Q2-pipeline_v2

      Public
      Python
      •0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • OnlineNMF.jl

      Public
      Online Non-negative Matrix Factorization
      Julia
      •
      Other
      •0•0•0•0•Updated Jul 31, 2023Jul 31, 2023

    • mwTensor

      Public
      R package for Multi-way Component Analysis
      R
      •
      Other
      •0•0•0•0•Updated Jul 6, 2023Jul 6, 2023

    • gcTensor

      Public
      R package for Generalised Coupled Tensor Factorisation
      R
      •
      Other
      •0•3•0•0•Updated Jul 6, 2023Jul 6, 2023

    • iTensor

      Public
      R package for ICA-based Matrix/Tensor Decomposition
      R
      •
      Other
      •1•1•0•0•Updated Jun 26, 2023Jun 26, 2023

    • ramdaq_testdata

      Public
      Files for testing ramdaq
      MIT License
      •0•0•0•0•Updated Jun 8, 2023Jun 8, 2023

    • symTensor

      Public
      R package for symmetric arithmetic and decomposition of Tensor
      0•0•0•0•Updated May 23, 2023May 23, 2023

    • Vicus

      Public
      Vicus: Exploiting local structures to improve network-based analysis of biological data
      HTML
      •
      Other
      •0•1•0•0•Updated Mar 24, 2023Mar 24, 2023

    • guidedPLS

      Public
      Supervised dimensional reduction by guided partial least squares
      R
      •
      Other
      •0•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • guidedPLS-experiments

      Public
      0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

    • hmmTensor

      Public
      R package for Hidden Markov Model (HMM) by matrix/tensor decomposition
      MIT License
      •0•0•0•0•Updated Mar 7, 2023Mar 7, 2023

    • WormTimeSeries

      Public
      R
      •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • ttTensor

      Public
      R package for Tensor-Train Decomposition
      R
      •
      MIT License
      •0•3•0•0•Updated Jan 12, 2023Jan 12, 2023

    • scTensor

      Public
      R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
      R
      •6•34•1•0•Updated Jan 12, 2023Jan 12, 2023