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lsf.yaml
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# Support for Snakemake < v8
__default__:
- "-P acc_CommonMind"
- "-W 48:00"
BAM_processing:
- "-q express"
Picard_GC_bias_metrics:
- "-q express"
Picard_RNAseq_metrics:
- "-q express"
create_FB:
- "-q express"
create_mismatch_fasta:
- "-q express"
build_kallisto_index:
- "-q express"
run_kallisto:
- "-q express"
run_bustools_correct:
- "-q express"
run_bustools_sort:
- "-q express"
run_bustools_count:
- "-q express"
create_h5ad_bustools:
- "-q express"
run_calico_solo:
- "-q express"
demux_samples:
- "-q express"
create_inp_cellSNP:
- "-q express"
cellSNP:
- "-q express"
vireoSNP:
- "-q premium"
# split_bams:
# - "-q "
create_inp_splitBams:
- "-q premium"
filt_chr_bams:
- "-q premium"
split_bams:
- "-q premium"
update_stats:
- "-q express"
create_per_donor_vcf:
- "-q express"
STARsolo_SNV_aware_sort:
- "-q express"
shuf_donor_bam:
- "-q express"
add_obs_to_final_count_matrix:
- "-q express"
qtltools_mbv:
- "-q express"
multiBamSummary:
- "-q express"