From 3086b5b8b88fa1e33a01ba2fc1badd085928058a Mon Sep 17 00:00:00 2001
From: Ben Jeffery <ben.jeffery@bdi.ox.ac.uk>
Date: Mon, 13 May 2024 23:42:00 +0100
Subject: [PATCH] Add coveralls

---
 .github/workflows/ci.yml | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index a7a9225..53ce984 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -41,7 +41,13 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           python -m pip install '.[dev]'
-      - run: pytest
+      - name: Run tests
+        run: |
+          pytest --cov=bio2zarr
+      - name: Upload coverage to Coveralls
+        uses: coverallsapp/github-action@v2.3.0
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
 
   packaging:
     name: Packaging
@@ -69,3 +75,4 @@ jobs:
         run: |
           vcfpartition --help
           python -m bio2zarr vcfpartition --help
+