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eager2poseidon 0.3.6

[0.3.6] - 2023-05-10

Added

Fixed

  • fill_in_janno(): Now correctly keeps Relation_* columns.
  • fill_genetic_sex(): Should now work with newer R and pacakge versions.
  • read_eager_stats_table(): Eager tables are now joined with eager TSV to allow for sample names that include _ before the first ..
  • read_eager_stats_table(): Use sprintf instead of format for formatting decimals. Should avoid digits=0 error in newer R versions.
  • eager2poseidon.R: Added explicit .cols statement to mutate. needed for newer dplyr versions.

Dependencies

Deprecated

eager2poseidon 0.3.5

[0.3.5] - 2023-03-01

Added

Fixed

  • compile_eager_result_tables(): Corrected column name for number of libraries. Nr_Libs -> Nr_Libraries. Closes #4
  • compile_across_lib_results(): Inference of Nr_Libraries corrected to count only unique values. This also fixed inference of Capture_Type. Closes #5
  • compile_across_lib_results(): Corrected weighted sum calculation to only include unique rows of library-level data. Closes #6
  • compile_across_lib_results(): Corrected Library_Names field. Now includes only unique library names.

Dependencies

  • Added vctrs to package dependencies

Deprecated

eager2poseidon 0.3.2

  • Update C14 quickcalibrate backend for compatibility with poseidonR v0.9.0.

eager2poseidon 0.3.1

  • x-/y-rates from sexdeterrine are now reported in Sex_Determination_Note field, and updated when the Genetic_Sex is updated or the field is missing.
  • In cases where more than one set of sex determination results exists in the general stats table, use the first available. Generally this will be at the Sample level, which is a good default. In cases where both ds and ss libraries are used, one of the two is picked up depending on ordering. However, the resuls should not vary much between libraries, so this should not affect results much.

eager2poseidon 0.3.0

  • Added a NEWS.md file to track changes to the package.
  • Genetic_Sex field is now filled based on eager sexdeterrmine results.
  • x-/y-rates from sexdeterrine are now added to the Note field if that is empty.