DESCRIPTION

Package: CENTRE
Type: Package
Title: an R package to predict tissue specific enhancer target interactions
Version: 0.99.0
Authors@R: c(person("Sara", "Lopez Ruiz de Vargas", role = c("cre"), 
           email = "lopez_s@molgen.mpg.de", 
           comment=c(ORCID="0000-0002-1290-4774")),
           person("Trisevgeni", "Rapakoulia", role = c("aut"), email = ""),
           person("Martin", "Vingron", role = c("aut"), 
           email = "vingron@molgen.mpg.de"))
Description: An R package to predict Enhancer Promoter Interactions in specific
             tissues. The package has two main use cases : the user can give a
             file with genes of interest or enhancer target pairs of interest. 
             In the first case CENTRE will generate the enhancer target pairs
             and predict how likely they are to interact in the tissue and in
             the second case it will predict how likely the given pairs are to
             interact. 
License: Artistic-2.0
Encoding: UTF-8
LazyData: false 
Imports: 
    xgboost,
    crupR,
    metapod,
    RSQLite,
    GenomicRanges,
    IRanges,
    regioneR,
    utils,
    stats
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Depends: 
    R (>= 4.4.0)
Suggests: 
    knitr,
    testthat (>= 3.0.0),
Config/testthat/edition: 3
biocViews: BiologicalQuestion, Software
VignetteBuilder: knitr