diff --git a/workflow/rules/circle_map.smk b/workflow/rules/circle_map.smk index 9aa4cf9..3ed0e43 100644 --- a/workflow/rules/circle_map.smk +++ b/workflow/rules/circle_map.smk @@ -65,12 +65,12 @@ rule clean_circle_map_realign_output: conda: "../envs/pandas.yaml" params: - min_circle_score=config["circle_filtering"]["min_circle_score"], - min_split_reads=config["circle_filtering"]["min_split_reads"], - min_discordant_read_pairs=config["circle_filtering"]["min_discordant_read_pairs"], - max_uncovered_fraction=config["circle_filtering"]["max_uncovered_fraction"], - min_mean_coverage=config["circle_filtering"]["min_mean_coverage"], - min_circle_length=config["circle_filtering"]["min_circle_length"], - max_circle_length=config["circle_filtering"]["max_circle_length"], + min_circle_score=config["circle_filtering"]["min_circle_score"], + min_split_reads=config["circle_filtering"]["min_split_reads"], + min_discordant_read_pairs=config["circle_filtering"]["min_discordant_read_pairs"], + max_uncovered_fraction=config["circle_filtering"]["max_uncovered_fraction"], + min_mean_coverage=config["circle_filtering"]["min_mean_coverage"], + min_circle_length=config["circle_filtering"]["min_circle_length"], + max_circle_length=config["circle_filtering"]["max_circle_length"], script: "../scripts/clean_circle_map_realign_output.py"