diff --git a/workflow/scripts/clean_circle_map_realign_output.py b/workflow/scripts/clean_circle_map_realign_output.py index a330087..99a5c02 100644 --- a/workflow/scripts/clean_circle_map_realign_output.py +++ b/workflow/scripts/clean_circle_map_realign_output.py @@ -38,7 +38,7 @@ # filter out low-quality circles, according to: # https://github.com/iprada/Circle-Map/wiki/Circle-Map-Realign-output-files circles = circles.loc[ - ( circles["circle_score"] >= 200 ) & + ( circles["circle_score"] >= 50 ) & ( circles["discordant_reads"] > 0 ) & ( circles["split_reads"] > 0 ) & ( circles["uncovered_fraction"] < 1 )