Discussions

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  Link Genes to 'active motifs'

  BartBryant asked Jun 6, 2024 in Q&A · Unanswered

  

  

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  LinkPeaks function not functioning in AWS RStudio server

  chsnys started May 9, 2024 in General

  

  

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  Signac: RegionStats: Not all seqlevels present in supplied genome, trying to load regions beyond the boundaries of non-circular sequence "chr8"

  Zoeyau531 started Jun 4, 2024 in General

  

  

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  Integration scATAC with scRNAseq not multiomic

  documentation Documentation help

  yamihn asked Jun 4, 2024 in Q&A · Unanswered

  

  

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  Using FindTransferAnchors on individual snATAC + snRNA dataset pairs before merging?

  mattbcvs started Jun 5, 2024 in General

  

  

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  differential test for atacseq data alone

  documentation Documentation help

  dedeepyavaka asked Jun 12, 2024 in Q&A · Unanswered

  

  

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  Need for peak re-calling after Cell Ranger arc v2?

  AmelZulji asked Apr 3, 2024 in Q&A · Unanswered

  

  

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  Cells with no neighbors

  shahrozeabbas started Nov 30, 2023 in General

  

  

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  Peak annotation

  l-magnificence asked Feb 1, 2021 in Q&A · Answered

  

  

  

  

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  Trajectory/Pseudotime with multiple multiome samples.

  enhancement New feature or request

  mossconfuse asked Mar 1, 2024 in Q&A · Unanswered

  

  

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  CreateChromatinAssay error | unable to download ucsd genome

  HaikuoLi asked May 15, 2024 in Q&A · Closed · Unanswered

  

  

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  Can you create a chromatin assay using multiple fragment files for a single sample? (Fragments by chromosome?)

  aburdencoding asked May 13, 2024 in Q&A · Unanswered

  

  

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  Missing Metadata for Signac Analysis

  Jasminefighter asked Jan 31, 2024 in Q&A · Unanswered

  

  

  

  

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  filtering criteria and multiplets

  tanasa started May 9, 2022 in General

  

  

  

  

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  Integrateing 10X Multiome

  AAA-3 asked Apr 26, 2024 in Q&A · Answered

  

  

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  About merging objects

  documentation Documentation help

  CCGOGO12 asked Apr 25, 2024 in Q&A · Unanswered

  

  

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  Find specific motif from DARs/peaks

  bhekmat started Apr 16, 2024 in General · Closed

  

  

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  Merge and integrate more than 30 sc-ATAC datasets-Any quick way?

  lupr1 started Apr 11, 2024 in General

  

  

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  When to use CallPeaks(), prior to merging, or after merging?

  sam-mick asked Apr 10, 2024 in Q&A · Unanswered

  

  

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  how to compare across samples, is it already possible?

  BartBryant asked Mar 29, 2024 in Q&A · Unanswered

  

  

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  Proper formating of object to run RegionStats and LinkPeaks

  sylestiel started Apr 4, 2024 in General

  

  

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  Species of interest not present in Ensembl database

  ArunMaurya8 asked Apr 2, 2024 in Q&A · Closed · Unanswered

  

  

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  What is normalized signal in CoveragePlot?

  SherryCha started Apr 3, 2024 in General

  

  

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  use of other Seurat fxns ['FindConservedMarkers( )', 'FindAllMarkers( )', and 'subset( )'] with scATACseq data in Signac

  BartBryant started Apr 2, 2024 in General

  

  

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  Merging and Integrating Preprocessed GEX to ATAC (10X Multiome)

  AAA-3 asked Mar 21, 2024 in Q&A · Unanswered

  

  

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