diff --git a/tests/test_compare_vcfs.py b/tests/test_compare_vcfs.py index 63741f9..5edd6cf 100644 --- a/tests/test_compare_vcfs.py +++ b/tests/test_compare_vcfs.py @@ -71,10 +71,10 @@ def test_both_biallelic_same_alleles_same_order(): ds1 = make_test_case() ds2 = ds1.copy(deep=True) actual = compare_vcfs.remap_genotypes(ds1, ds2) - expected = [ + expected = np.array([ [[0, 1], [1, 0]], [[1, 0], [0, 1]], - ] + ]) assert np.array_equal(actual, expected) @@ -85,10 +85,10 @@ def test_both_biallelic_same_alleles_different_order(): ds2.variant_allele[i] = xr.DataArray(np.flip(ds2.variant_allele[i])) ds2.call_genotype[i] = xr.DataArray(np.where(ds2.call_genotype[i] == 0, 1, 0)) actual = compare_vcfs.remap_genotypes(ds1, ds2) - expected = [ + expected = np.array([ [[0, 1], [1, 0]], [[1, 0], [0, 1]], - ] + ]) assert np.array_equal(actual, expected) @@ -102,17 +102,17 @@ def test_biallelic_monoallelic(): ds2.call_genotype[i] = xr.DataArray(np.zeros_like(ds2.call_genotype[i])) # Subtest 1 actual = compare_vcfs.remap_genotypes(ds1, ds2) - expected = [ + expected = np.array([ [[1, 1], [1, 1]], [[2, 2], [2, 2]], - ] + ]) assert np.array_equal(actual, expected) # Subtest 2 actual = compare_vcfs.remap_genotypes(ds2, ds1) - expected = [ + expected = np.array([ [[1, 0], [0, 1]], [[2, 1], [1, 2]], - ] + ]) assert np.array_equal(actual, expected) @@ -127,17 +127,17 @@ def test_both_biallelic_different_alleles(): ds2.call_genotype[1] = xr.DataArray(data=[[0, 1], [1, 0]]) # Subtest 1 actual = compare_vcfs.remap_genotypes(ds1, ds2) - expected = [ + expected = np.array([ [[1, 2], [2, 1]], [[2, 3], [3, 2]], - ] + ]) assert np.array_equal(actual, expected) # Subtest 2 actual = compare_vcfs.remap_genotypes(ds2, ds1) - expected = [ + expected = np.array([ [[2, 0], [0, 2]], [[3, 2], [2, 3]], - ] + ]) assert np.array_equal(actual, expected) @@ -156,10 +156,10 @@ def test_both_monoallelic(): ds2.variant_allele[1] = xr.DataArray([b'G', b'']) ds2.call_genotype[1] = xr.DataArray(data=np.zeros_like(ds2.call_genotype[1])) actual = compare_vcfs.remap_genotypes(ds1, ds2) - expected = [ + expected = np.array([ [[0, 0], [0, 0]], [[1, 1], [1, 1]], - ] + ]) assert np.array_equal(actual, expected)