This repository is prepared as a supplemental material of our review article for Frontiers in Physiology.
No additional procedures are necessary since all result files are output as pdf files and saved with additional data in the analyses folder. For MYO3A, a csv file is placed to plot variants associated with the autosomal dominant hearing loss.
To rerun all procedures, install the following packages and run run_all.ps1 after entering the analyses folder. It is highly recommended to install these packages in a virtual environment of python.
numpypandasmatplotlibBiopython(https://biopython.org/)
This repository contains two python scripts:
clcprep.py- pre-processor for the csv files exported from ClinVarmapvariants.py- script to plot variants on graphs.
Python scripts in this repository are licensed under the MIT licence. List of variants are exported from ClinVar as of Dec 3 2023.