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requirements-dev.lock
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# generated by rye
# use `rye lock` or `rye sync` to update this lockfile
#
# last locked with the following flags:
# pre: false
# features: []
# all-features: false
# with-sources: false
# generate-hashes: false
# universal: false
-e file:.
anyio==4.4.0
# via httpx
# via jupyter-server
# via watchfiles
appdirs==1.4.4
# via stdpopsim
# via tseda
argon2-cffi==23.1.0
# via jupyter-server
argon2-cffi-bindings==21.2.0
# via argon2-cffi
arrow==1.3.0
# via isoduration
asciitree==0.3.3
# via zarr
asttokens==2.4.1
# via stack-data
async-lru==2.0.4
# via jupyterlab
attrs==24.2.0
# via demes
# via jsonschema
# via referencing
# via stdpopsim
babel==2.16.0
# via jupyterlab-server
beautifulsoup4==4.12.3
# via nbconvert
bleach==6.1.0
# via nbconvert
# via panel
bokeh==3.5.2
# via geoviews
# via holoviews
# via hvplot
# via panel
cartopy==0.23.0
# via geoviews
# via tseda
certifi==2024.7.4
# via httpcore
# via httpx
# via pyogrio
# via pyproj
# via requests
cffi==1.17.0
# via argon2-cffi-bindings
charset-normalizer==3.3.2
# via requests
click==8.1.7
# via dask
# via tsbrowse
# via tseda
cloudpickle==3.0.0
# via dask
colorcet==3.1.0
# via datashader
# via holoviews
# via hvplot
comm==0.2.2
# via ipykernel
# via ipywidgets
contourpy==1.2.1
# via bokeh
# via matplotlib
cycler==0.12.1
# via matplotlib
daiquiri==3.2.5.1
# via tsbrowse
# via tseda
dask==2024.8.1
# via dask-expr
# via datashader
# via tseda
dask-expr==1.1.11
# via dask
datashader==0.16.3
# via tsbrowse
debugpy==1.8.5
# via ipykernel
decorator==5.1.1
# via ipython
defusedxml==0.7.1
# via nbconvert
demes==0.2.3
# via msprime
diskcache==5.6.3
# via tseda
executing==2.0.1
# via stack-data
fasteners==0.19
# via zarr
fastjsonschema==2.20.0
# via nbformat
fonttools==4.53.1
# via matplotlib
fqdn==1.5.1
# via jsonschema
fsspec==2024.6.1
# via dask
geodatasets==2024.7.0
geopandas==1.0.1
# via tseda
geoviews==1.13.0
# via tseda
greenlet==3.1.1
# via playwright
h11==0.14.0
# via httpcore
hatch-vcs==0.4.0
hatchling==1.25.0
# via hatch-vcs
holoviews==1.19.1
# via geoviews
# via hvplot
# via tseda
httpcore==1.0.5
# via httpx
httpx==0.27.0
# via jupyterlab
humanize==4.10.0
# via stdpopsim
# via tszip
hvplot==0.11.1
# via tsbrowse
# via tseda
idna==3.7
# via anyio
# via httpx
# via jsonschema
# via requests
iniconfig==2.0.0
# via pytest
ipykernel==6.29.5
# via jupyter
# via jupyter-console
# via jupyterlab
# via qtconsole
ipython==8.26.0
# via ipykernel
# via ipywidgets
# via jupyter-console
ipywidgets==8.1.3
# via jupyter
isoduration==20.11.0
# via jsonschema
jedi==0.19.1
# via ipython
jinja2==3.1.4
# via bokeh
# via jupyter-server
# via jupyterlab
# via jupyterlab-server
# via nbconvert
json5==0.9.25
# via jupyterlab-server
jsonpointer==3.0.0
# via jsonschema
jsonschema==4.23.0
# via jupyter-events
# via jupyterlab-server
# via nbformat
# via tskit
jsonschema-specifications==2023.12.1
# via jsonschema
jupyter==1.0.0
jupyter-client==8.6.2
# via ipykernel
# via jupyter-console
# via jupyter-server
# via nbclient
# via qtconsole
jupyter-console==6.6.3
# via jupyter
jupyter-core==5.7.2
# via ipykernel
# via jupyter-client
# via jupyter-console
# via jupyter-server
# via jupyterlab
# via nbclient
# via nbconvert
# via nbformat
# via qtconsole
jupyter-events==0.10.0
# via jupyter-server
jupyter-lsp==2.2.5
# via jupyterlab
jupyter-server==2.14.2
# via jupyter-lsp
# via jupyterlab
# via jupyterlab-server
# via notebook
# via notebook-shim
jupyter-server-terminals==0.5.3
# via jupyter-server
jupyterlab==4.2.4
# via notebook
jupyterlab-pygments==0.3.0
# via nbconvert
jupyterlab-server==2.27.3
# via jupyterlab
# via notebook
jupyterlab-widgets==3.0.11
# via ipywidgets
kiwisolver==1.4.5
# via matplotlib
linkify-it-py==2.0.3
# via panel
llvmlite==0.43.0
# via numba
locket==1.0.0
# via partd
markdown==3.7
# via panel
markdown-it-py==3.0.0
# via mdit-py-plugins
# via panel
markupsafe==2.1.5
# via jinja2
# via nbconvert
matplotlib==3.9.2
# via cartopy
matplotlib-inline==0.1.7
# via ipykernel
# via ipython
mdit-py-plugins==0.4.1
# via panel
mdurl==0.1.2
# via markdown-it-py
mistune==3.0.2
# via nbconvert
msprime==1.3.3
# via pyslim
# via stdpopsim
multipledispatch==1.0.0
# via datashader
nbclient==0.10.0
# via nbconvert
nbconvert==7.16.4
# via jupyter
# via jupyter-server
nbformat==5.10.4
# via jupyter-server
# via nbclient
# via nbconvert
nest-asyncio==1.6.0
# via ipykernel
newick==1.9.0
# via msprime
nodeenv==1.9.1
# via pyright
notebook==7.2.1
# via jupyter
notebook-shim==0.2.4
# via jupyterlab
# via notebook
numba==0.60.0
# via datashader
# via tseda
numcodecs==0.13.0
# via tszip
# via zarr
numpy==2.0.1
# via bokeh
# via cartopy
# via contourpy
# via dask
# via datashader
# via geopandas
# via geoviews
# via holoviews
# via hvplot
# via matplotlib
# via msprime
# via numba
# via numcodecs
# via pandas
# via pyarrow
# via pyogrio
# via pyslim
# via scipy
# via shapely
# via stdpopsim
# via tskit
# via tszip
# via xarray
# via zarr
overrides==7.7.0
# via jupyter-server
packaging==24.1
# via bokeh
# via cartopy
# via dask
# via datashader
# via geopandas
# via geoviews
# via hatchling
# via holoviews
# via hvplot
# via ipykernel
# via jupyter-server
# via jupyterlab
# via jupyterlab-server
# via matplotlib
# via nbconvert
# via panel
# via pooch
# via pyogrio
# via pytest
# via qtconsole
# via qtpy
# via setuptools-scm
# via xarray
pandas==2.2.2
# via bokeh
# via dask
# via dask-expr
# via datashader
# via geopandas
# via holoviews
# via hvplot
# via panel
# via stdpopsim
# via xarray
pandocfilters==1.5.1
# via nbconvert
panel==1.5.3
# via geoviews
# via holoviews
# via hvplot
# via tsbrowse
# via tseda
param==2.1.1
# via datashader
# via geoviews
# via holoviews
# via hvplot
# via panel
# via pyct
# via pyviz-comms
parso==0.8.4
# via jedi
partd==1.4.2
# via dask
pathspec==0.12.1
# via hatchling
pexpect==4.9.0
# via ipython
pillow==10.4.0
# via bokeh
# via datashader
# via matplotlib
pip==24.2
platformdirs==4.2.2
# via jupyter-core
# via pooch
playwright==1.48.0
# via pytest-playwright
pluggy==1.5.0
# via hatchling
# via pytest
pooch==1.8.2
# via geodatasets
prometheus-client==0.20.0
# via jupyter-server
prompt-toolkit==3.0.47
# via ipython
# via jupyter-console
psutil==6.0.0
# via ipykernel
ptyprocess==0.7.0
# via pexpect
# via terminado
pure-eval==0.2.3
# via stack-data
pyarrow==17.0.0
# via dask-expr
pycparser==2.22
# via cffi
pyct==0.5.0
# via datashader
pyee==12.0.0
# via playwright
pygments==2.18.0
# via ipython
# via jupyter-console
# via nbconvert
# via qtconsole
pyogrio==0.9.0
# via geopandas
pyparsing==3.1.2
# via matplotlib
pyproj==3.6.1
# via cartopy
# via geopandas
# via geoviews
pyright==1.1.388
pyshp==2.3.1
# via cartopy
pyslim==1.0.4
# via stdpopsim
pytest==8.3.2
# via pytest-base-url
# via pytest-playwright
pytest-base-url==2.1.0
# via pytest-playwright
pytest-playwright==0.5.2
python-dateutil==2.9.0.post0
# via arrow
# via jupyter-client
# via matplotlib
# via pandas
python-json-logger==2.0.7
# via daiquiri
# via jupyter-events
python-slugify==8.0.4
# via pytest-playwright
pytz==2024.1
# via pandas
pyviz-comms==3.0.3
# via holoviews
# via panel
pyyaml==6.0.2
# via bokeh
# via dask
# via jupyter-events
pyzmq==26.1.1
# via ipykernel
# via jupyter-client
# via jupyter-console
# via jupyter-server
# via qtconsole
qtconsole==5.5.2
# via jupyter
qtpy==2.4.1
# via qtconsole
referencing==0.35.1
# via jsonschema
# via jsonschema-specifications
# via jupyter-events
requests==2.32.3
# via datashader
# via jupyterlab-server
# via panel
# via pooch
# via pytest-base-url
rfc3339-validator==0.1.4
# via jsonschema
# via jupyter-events
rfc3986-validator==0.1.1
# via jsonschema
# via jupyter-events
rpds-py==0.20.0
# via jsonschema
# via referencing
ruamel-yaml==0.18.6
# via demes
ruamel-yaml-clib==0.2.8
# via ruamel-yaml
scipy==1.14.1
# via datashader
send2trash==1.8.3
# via jupyter-server
setuptools==73.0.1
# via jupyterlab
# via setuptools-scm
setuptools-scm==8.1.0
# via hatch-vcs
shapely==2.0.6
# via cartopy
# via geopandas
# via geoviews
six==1.16.0
# via asttokens
# via bleach
# via python-dateutil
# via rfc3339-validator
sniffio==1.3.1
# via anyio
# via httpx
soupsieve==2.6
# via beautifulsoup4
stack-data==0.6.3
# via ipython
stdpopsim==0.2.0
svgwrite==1.4.3
# via tskit
terminado==0.18.1
# via jupyter-server
# via jupyter-server-terminals
text-unidecode==1.3
# via python-slugify
tinycss2==1.3.0
# via nbconvert
toolz==0.12.1
# via dask
# via datashader
# via partd
tornado==6.4.1
# via bokeh
# via ipykernel
# via jupyter-client
# via jupyter-server
# via jupyterlab
# via notebook
# via terminado
tqdm==4.66.5
# via panel
traitlets==5.14.3
# via comm
# via ipykernel
# via ipython
# via ipywidgets
# via jupyter-client
# via jupyter-console
# via jupyter-core
# via jupyter-events
# via jupyter-server
# via jupyterlab
# via matplotlib-inline
# via nbclient
# via nbconvert
# via nbformat
# via qtconsole
trove-classifiers==2024.7.2
# via hatchling
tsbrowse @ git+https://github.com/tskit-dev/tsbrowse@2faab76ad3a1f4bb51e6a39ce1c244dc1ac8209b
# via tseda
tskit==0.6.0
# via msprime
# via pyslim
# via tsbrowse
# via tseda
# via tszip
tszip==0.2.5
# via tsbrowse
# via tseda
types-python-dateutil==2.9.0.20240821
# via arrow
typing-extensions==4.12.2
# via panel
# via pyee
# via pyright
tzdata==2024.1
# via pandas
uc-micro-py==1.0.3
# via linkify-it-py
uri-template==1.3.0
# via jsonschema
urllib3==2.2.2
# via requests
watchfiles==0.24.0
wcwidth==0.2.13
# via prompt-toolkit
webcolors==24.8.0
# via jsonschema
webencodings==0.5.1
# via bleach
# via tinycss2
websocket-client==1.8.0
# via jupyter-server
widgetsnbextension==4.0.11
# via ipywidgets
xarray==2024.7.0
# via datashader
xyzservices==2024.6.0
# via bokeh
# via geoviews
# via tseda
zarr==2.18.2
# via stdpopsim
# via tszip