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when you change a file which is already in the repository, you have to git add it again if you want it to be staged.
This allows you to commit only a subset of the changes you made since the last commit. For example, let's say you have file a, file b and file c. You modify file a and file b but the changes are very different in nature and you don't want all of them to be in one single commit. You issue
git add a.txt
git commit a.txt -m "bugfix, in a"
git add b.cpp
git commit b.cpp -m "new feature, in b"
As a side note, if you want to commit everything you can just type