DESCRIPTION

Package: cisDynet
Type: Package
Title: An integrated package for modeling gene-regulatory dynamics and networks.
Version: 1.0.0
Authors@R: person("Tao", "Zhu", , "tzhubio@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9667-498X"))
BugReports: https://github.com/tzhu-bio/cisDynet/issues
Depends:
    R (>= 4.3.0)
Description: This package is designed to do advanced ATAC-seq analyses in R.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
biocViews:
    AnnotationDbi,
    ChIPseeker,
    clusterProfiler,
    ComplexHeatmap,
    DESeq2,
    EnrichedHeatmap,
    enrichplot,
    GenomicFeatures,
    GenomicRanges,
    IRanges,
    org.Hs.eg.db,
    preprocessCore,
    rtracklayer,
    SummarizedExperiment,
    TFBSTools
Imports: 
    aplot,
    assertthat,
    BSDA,
    corrplot,
    cowplot,
    data.table,
    dendextend,
    dplyr,
    ggfortify,
    ggplot2,
    ggpubr,
    ggrepel,
    ggridges,
    ggtern,
    glasso,
    gtools,
    igraph,
    matrixStats,
    paletteer,
    parallel,
    pheatmap,
    philentropy,
    plyr,
    progress,
    rdist,
    reshape2,
    rlist,
    stats,
    tidyr,
    tools,
    UpSetR,
    valr,
    venn