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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(GWASEnrichment)
export(GWASNorm)
export(addAnnotation)
export(addFootprint)
export(annoMergedPeaks)
export(annoPeaks)
export(assemble_connections)
export(bedVis)
export(calFisherPeaks)
export(calJSD)
export(calPairwise)
export(calSPM)
export(calc_dist_matrix)
export(calcuRotatedCoord)
export(checkFTAnno)
export(checkGeAnno)
export(compareFootprints)
export(custom_order)
export(estimate_distance_parameter)
export(flower_plot)
export(generate_cicero_models)
export(generate_windows)
export(getClusterNum)
export(getClusterTargetGenes)
export(getCoaccessible)
export(getCount)
export(getCountSplit)
export(getDiffPeak)
export(getDiffTargetGenes)
export(getFootprintScore)
export(getGER)
export(getGeneBed)
export(getJasparMotifs2018)
export(getMotif2Gene)
export(getNetwork)
export(getPeak2Gene)
export(getRankMotif)
export(getSNP2Gene)
export(getSpecificPeak)
export(getSuperEnhancer)
export(getTimeATAC)
export(getTimeGene)
export(getTimeRNA)
export(getTopSpecifcPeaks)
export(getTriads)
export(getTriadsTargetGenes)
export(get_beds)
export(get_combine_result)
export(get_overlap)
export(get_rho_mat)
export(get_singlebed)
export(get_unique)
export(linkVis)
export(loadBigWig)
export(loadFullBigWig)
export(logfile)
export(makeSummarizedExperiment)
export(orderMatrix)
export(parse_bedpath)
export(plotClusterSpecificPeak)
export(plotCoGeneTracks)
export(plotCoTracks)
export(plotDendrogram)
export(plotDiffFootprint)
export(plotEnrich)
export(plotFlower)
export(plotFootprintScore)
export(plotFootprintScoreExp)
export(plotFragments)
export(plotGER)
export(plotGO)
export(plotGONetwork)
export(plotGeneTracks)
export(plotMA)
export(plotNetwork)
export(plotP2GHeatmap)
export(plotP2GTracks)
export(plotPCA)
export(plotPDI)
export(plotPeakGene)
export(plotSpecificPeak)
export(plotSummitDis)
export(plotTSS)
export(plotTimeAll)
export(plotTimeGene)
export(plotTracks)
export(plotTriads)
export(plotUpset)
export(plotVenn)
export(plotVolcano)
export(quantification)
export(quantile_normalization)
export(reconcile)
export(rowZscores)
export(run_cicero)
export(trackVis)
export(trancriptVis)
import(cowplot)
import(dplyr)
import(ggplot2)
import(ggfortify)
import(paletteer)
import(tidyverse)
importFrom(UpSetR,fromExpression)
importFrom(UpSetR,upset)
importFrom(corrplot,COL1)
importFrom(corrplot,corrplot)
importFrom(stats,hclust)
importFrom(stats,prcomp)
importFrom(dplyr,arrange)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(paletteer,paletteer_d)
importFrom(valr,bed_intersect)
importFrom(valr,bed_merge)
importFrom(valr,read_bed)
importFrom(venn,venn)
importFrom(venn,venn)