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fix ena
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R/app-ENA.R

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Original file line numberDiff line numberDiff line change
@@ -93,6 +93,9 @@ ezMethodGetEnaData <- function(input=NA, output=NA, param=NA){
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} else {
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tryCatch({
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experimentID <- xmlToList(runInfo)[[1]]$EXPERIMENT_REF$.attrs
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if(length(experimentID) > 1){
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experimentID <- experimentID['accession']
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}
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cmd = paste0("curl -o ", experimentID,".xml ", "-X GET \'https://www.ebi.ac.uk/ena/browser/api/xml/",experimentID,"?download=true\'")
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ezSystem(cmd)
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xml <- xmlParse(paste0(experimentID, '.xml'))

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