0.4.0

Added

• add analysis fixture to provide file upload capability (#91)
• add indexes fixture to provide simple access to reference indexes used in an analysis workflow (#94)

Changed

• provide more discrete fixtures instead of analysis_args (#90)
• rename temp_path fixture to work_path
• remove temp_analysis_path fixture
• update fixtures documentation (#90)

0.3.0

Added

• implement logging (#66)
• add runtime pytest fixture to simplify workflow step testing (#84)
• add hmms workflow fixture

Changed

• remove direct database access to make move to database-less workflows smoother (#69)
• greatly improved documentation fixtures and hooks (#74)

Removed

• drop run-local sub-command

0.2.0

Added

• add reads fixture for using prepared sequencing read data used in an analysis workflow
• add run_subprocess fixture for executing command line tools
• add subtractions fixture for accessing subtractions selected by the user when the workflow job was created

Changed

• update documentation

0.1.3

Added

• add job_args fixture (#59)
• add proc and mem fixtures
• add complete list of fixtures to documentation
• add base Dockerfile

Fixed

• remove uvloop dependency as it was causing problems in Python 3.9 (#55)

0.1.2

Changed

• allow opt-out of uvloop during workflow execution
• print workflow results on console when in development mode

Fixed

• fix exception due to not installing virtool-core from PyPI

0.1.1

Fixed

• update quick start documentation to reflect current package API

0.1.0

The initial release of Virtool workflow.