Missing unite2024ITS.classification file

[vmikk]

Hello!

I'm trying to follow the example to classify sequences using the pre-computed thresholds with the command:

dnabarcoder/dnabarcoder.py classify -i dnabarcoder/query.unite2024ITS_BLAST.bestmatch -c unite2024ITS.classification -cutoffs unite2024ITS.unique.cutoffs.best.json

However, there is no unite2024ITS.classification file in the repository.
Could you please upload it?

With kind regards,
Vladimir

[vuthuyduong]

Dear Vladimir, I could not upload the unite2024ITS.classification file directly to my GitHub as it is too big. However, I have uploaded all the reference files in dnabarcoder's format to Zenodo (https://zenodo.org/record/12580255), so you can also download and use them. If you wish to compute these files yourself, there are instructions in the section "How to obtain these UNITE ITS, ITS1, and ITS2 reference sequences?" I hope this answers your question. Best regards, Duong

…

On Fri, 28 Jun 2024 at 11:49, Vladimir Mikryukov ***@***.***> wrote: Hello! I'm trying to follow the example to classify sequences using the pre-computed thresholds with the command: dnabarcoder/dnabarcoder.py classify -i dnabarcoder/query.unite2024ITS_BLAST.bestmatch -c unite2024ITS.classification -cutoffs unite2024ITS.unique.cutoffs.best.json However, there is no unite2024ITS.classification file in the repository. Could you please upload it? With kind regards, Vladimir — Reply to this email directly, view it on GitHub <#1>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AF6CZMTBR3NPJMVH72TUUCLZJUWSTAVCNFSM6AAAAABKBQ47R6VHI2DSMVQWIX3LMV43ASLTON2WKOZSGM4DAMBTGU4DKMQ> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[vmikk]

Great! Thank you so much for the fast answer and uploading files to Zenodo.