From 7d9260b16345c2ecc798e21a1e02191b1b57a6d2 Mon Sep 17 00:00:00 2001
From: cgao90 <gchao@umich.edu>
Date: Tue, 9 Mar 2021 14:52:36 -0500
Subject: [PATCH] fix testthat.R, enables appveyor, and update Version to 1.0.0

---
 DESCRIPTION      |  4 ++--
 appveyor.yml     | 50 ++++++++++++++++++++++++++++++++++++++++++++++++
 tests/testthat.R |  4 ++--
 3 files changed, 54 insertions(+), 4 deletions(-)
 create mode 100644 appveyor.yml

diff --git a/DESCRIPTION b/DESCRIPTION
index 106dc06f..28157e21 100755
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: rliger
-Version: 0.5.0
-Date: 2021-01-18
+Version: 1.0.0
+Date: 2021-03-09
 Type: Package
 Title: Linked Inference of Genomic Experimental Relationships
 Description: Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
diff --git a/appveyor.yml b/appveyor.yml
new file mode 100644
index 00000000..81686c4b
--- /dev/null
+++ b/appveyor.yml
@@ -0,0 +1,50 @@
+# DO NOT CHANGE the "init" and "install" sections below
+
+# Download script file from GitHub
+init:
+  ps: |
+        $ErrorActionPreference = "Stop"
+        Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
+        Import-Module '..\appveyor-tool.ps1'
+install:
+  - ps: Bootstrap
+
+# Adapt as necessary starting from here
+
+environment:
+  global:
+    R_ARCH: x64
+    USE_RTOOLS: true
+    BIOC_USE_DEVEL: "FALSE"
+    _R_CHECK_FORCE_SUGGESTS_: false
+    CRAN: "https://cloud.r-project.org"
+
+build_script:
+  - travis-tool.sh install_deps
+  - travis-tool.sh bioc_install S4Vectors
+
+test_script:
+  - travis-tool.sh run_tests
+
+on_failure:
+  - 7z a failure.zip *.Rcheck\*
+  - appveyor PushArtifact failure.zip
+
+artifacts:
+  - path: '*.Rcheck\**\*.log'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.out'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.fail'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.Rout'
+    name: Logs
+
+  - path: '\*_*.tar.gz'
+    name: Bits
+
+  - path: '\*_*.zip'
+    name: Bits
diff --git a/tests/testthat.R b/tests/testthat.R
index 65213bbd..692b1ff5 100644
--- a/tests/testthat.R
+++ b/tests/testthat.R
@@ -1,4 +1,4 @@
 library(testthat)
-library(liger)
+library(rliger)
 
-test_check("liger")
+test_check("rliger")