Prerank fails with list of gene sets

[CDSchuster]

Hello!

I've been trying to run gseapy on a cluster after installing via conda environment.

Whenever I give gp.prerank multiple genesets to examine, as:

["KEGG_2019_Mouse","MSigDB_Hallmark_2020", "GO_Biological_Process_2023"]

I get returned an error:

raise Exception("Error parsing gene_sets parameter for gene sets")
Exception: Error parsing gene_sets parameter for gene sets

I don't get that error if I only give it one geneset as a string. Even if I give it a list of one geneset it fails.

In addition to that, I'm getting this warning:

/home/cschuster/.local/lib/python3.8/site-packages/requests/init.py:102: RequestsDependencyWarning: urllib3 (2.1.0) or chardet (None)/charset_nor>
warnings.warn("urllib3 ({}) or chardet ({})/charset_normalizer ({}) doesn't match a supported "

And also, for some reason, both enrichr and prerank are not recognizing the argument "organism", so I had to omit it.

None of the problems above I encountered when running gseapy on my computer, only in the cluster through conda environments.

Thanks a lot in advance for your help!
Best regards

[zqfang]

what gseapy version in your cluster ? probably the version in your cluster was too old